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Report for CCDS51444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51444.1 Public Mus musculus 5 Gm10220 23 108 98 CCDS HistoryNCBI Gene:434689Re-query CCDS DB by CCDS ID:51444.1Re-query CCDS DB by GeneID:434689See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088236.4 ENSMUSP00000085569.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088236.4Link to Ensembl Protein Viewer:ENSMUSP00000085569.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088236Re-query CCDS DB by Protein ID:ENSMUSP00000085569
Original member Current member NCBI NM_001134299.1 NP_001127771.1 Accepted alive Link to Nucleotide Sequence:NM_001134299.1Link to Protein Sequence:NP_001127771.1Re-query CCDS DB by Nucleotide ID:NM_001134299Re-query CCDS DB by Protein ID:NP_001127771Link to BLAST:NP_001127771.1

Chromosomal Locations for CCDS 51444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 26116869 26117045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26117786 26117969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26118605 26118748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26120059 26120218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26121212 26121350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGCCTTGTTTGCCCGACTCTGCAGACTTTTTCAGAGAGTCAATGTGGATGGGAGAGAGACCAGAGAGG
GGAGGAAGGACGCTGACCTTCCATCTGAGAGGAATGAAGGACGAAGGAGGTGGACTTGGCGAATGTGCAT
GGCTCACAGACAGACAACATCCCCGGTACCTGTCAAAAGCAAAAAGCAGTTTGAGAAGGAAGAGAAGGAG
CTGATCAAAAAGATCCAGCTCACTACCGAGGAGACAAATGAGCTGAGAGATCGCCTGATCTACGTGACCG
AGGGATCCATGAACAAGAGGCCCTACCACAGGCAAACTCGACATTATAAAGAACTGAAATTAAAGGAGAA
GGAGATCATGACATATCTACACGACTTAGAGATGAAGAACATGGAGGCCCGAGAGAACAATCAGGAGCTC
AAGAAGGAGAAAAATTTCTATCGTAACCTGCACACCCGGATCCTGCTGGGGGAGAATCTTATAAAGAAGA
AGTTGGCGATATTGCAGCAGGAGAGCAAGGAAATACATGCTGATTGGGCCATCATTCAACAACGTTTGGT
GGAGTTGAACCTGAGTGGTAAAGACGAACAGGAGAAGACCAGCAACCTGGAAGCTCAAGAAAATCAGGTC
TCAGAAGCTGCAAGAAAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCTTGCAGAATGAGTTGCCAT
GCCAGGAGGCCCCTGCTGAGCACCATCCTCAGCACCCACCATCTTCCTCGGATGAATCTTCCTCAGATGA
ATCTTCTTATAGCACATGTCCTTCCTGGGAATAG

Translation (267 aa):
MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKE
LIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQEL
KKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQV
SEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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