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Report for CCDS16043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16043.1 Public Mus musculus 2 Nr4a2 23 108 98 CCDS HistoryNCBI Gene:18227Re-query CCDS DB by CCDS ID:16043.1Re-query CCDS DB by GeneID:18227See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028166.8 ENSMUSP00000028166.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028166.8Link to Ensembl Protein Viewer:ENSMUSP00000028166.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028166Re-query CCDS DB by Protein ID:ENSMUSP00000028166
Original member Current member EBI ENSMUST00000112629.7 ENSMUSP00000108248.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112629.7Link to Ensembl Protein Viewer:ENSMUSP00000108248.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112629Re-query CCDS DB by Protein ID:ENSMUSP00000108248
Original member NCBI NM_001139509.1 NP_001132981.1 Updated not alive Link to Nucleotide Sequence:NM_001139509.1Link to Protein Sequence:NP_001132981.1Re-query CCDS DB by Nucleotide ID:NM_001139509Re-query CCDS DB by Protein ID:NP_001132981
Current member NCBI NM_001139509.2 NP_001132981.1 Accepted alive Link to Nucleotide Sequence:NM_001139509.2Link to Protein Sequence:NP_001132981.1Re-query CCDS DB by Nucleotide ID:NM_001139509Re-query CCDS DB by Protein ID:NP_001132981Link to BLAST:NP_001132981.1
Original member NCBI NM_013613.2 NP_038641.1 Updated not alive Link to Nucleotide Sequence:NM_013613.2Link to Protein Sequence:NP_038641.1Re-query CCDS DB by Nucleotide ID:NM_013613Re-query CCDS DB by Protein ID:NP_038641
Current member NCBI NM_013613.3 NP_038641.1 Accepted alive Link to Nucleotide Sequence:NM_013613.3Link to Protein Sequence:NP_038641.1Re-query CCDS DB by Nucleotide ID:NM_013613Re-query CCDS DB by Protein ID:NP_038641Link to BLAST:NP_038641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132981.1 598 Q06219-1 598 100% 0 0
NP_038641.1 598 Q06219-1 598 100% 0 0

Chromosomal Locations for CCDS 16043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 57108156 57108412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57108561 57108739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57109063 57109265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57110114 57110277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57110637 57110766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 57111576 57112439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGCCTTGTGTTCAGGCGCAGTATGGGTCCTCGCCTCAAGGAGCCAGCCCCGCTTCTCAGAGCTACAGTT
ACCACTCTTCGGGAGAATACAGCTCCGATTTCTTAACTCCAGAGTTTGTCAAGTTTAGCATGGACCTCAC
CAACACTGAAATTACTGCCACCACTTCTCTCCCCAGCTTCAGTACCTTTATGGACAACTACAGCACAGGC
TACGACGTCAAGCCACCTTGCTTGTACCAAATGCCCCTGTCCGGACAGCAGTCCTCCATTAAGGTAGAAG
ACATTCAGATGCACAACTACCAGCAACACAGCCACCTGCCCCCTCAGTCCGAGGAGATGATGCCACACAG
CGGGTCGGTTTACTACAAGCCCTCTTCGCCCCCGACACCCAGCACCCCGAGCTTCCAGGTGCAGCATAGC
CCGATGTGGGACGATCCGGGCTCCCTTCACAACTTCCACCAGAACTACGTGGCCACTACGCATATGATCG
AGCAGAGGAAGACACCTGTCTCCCGCCTGTCACTCTTCTCCTTTAAGCAGTCGCCCCCGGGCACTCCTGT
GTCTAGCTGCCAGATGCGCTTCGACGGGCCTCTGCACGTCCCCATGAACCCGGAGCCCGCGGGCAGCCAC
CACGTAGTGGATGGGCAGACCTTCGCCGTGCCCAACCCCATTCGCAAGCCGGCATCCATGGGCTTCCCGG
GCCTGCAGATCGGCCACGCATCGCAGTTGCTTGACACGCAGGTGCCCTCGCCGCCGTCCCGGGGCTCTCC
CTCCAATGAGGGTCTGTGCGCTGTTTGCGGTGACAACGCGGCCTGTCAGCACTACGGTGTTCGCACTTGT
GAGGGCTGCAAAGGTTTCTTTAAGCGCACGGTGCAAAAAAACGCGAAATATGTGTGTTTAGCAAATAAAA
ACTGCCCAGTGGACAAGCGCCGCCGAAATCGTTGTCAGTACTGTCGGTTTCAGAAGTGCCTAGCTGTTGG
GATGGTTAAAGAAGTGGTTCGCACGGACAGTTTAAAAGGCCGGAGAGGTCGTTTACCCTCGAAGCCGAAG
AGCCCACAGGATCCCTCTCCCCCCTCACCTCCGGTGAGTCTGATCAGTGCCCTCGTCAGAGCCCACGTCG
ATTCCAATCCGGCAATGACCAGCCTGGACTATTCCAGGTTCCAGGCAAACCCTGACTATCAGATGAGTGG
AGATGATACCCAACATATCCAGCAGTTCTACGATCTCCTGACCGGCTCTATGGAGATCATCAGAGGGTGG
GCAGAGAAGATCCCTGGCTTTGCTGACCTGCCCAAAGCCGACCAGGACCTGCTTTTTGAATCAGCTTTCT
TAGAATTATTTGTTCTGCGCTTAGCATACAGGTCCAACCCAGTGGAGGGTAAACTCATCTTTTGCAATGG
GGTGGTCTTGCACAGGTTGCAATGCGTGCGTGGCTTTGGGGAATGGATTGATTCCATTGTTGAATTCTCC
TCCAACTTGCAGAATATGAACATCGACATTTCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG
AGAGACACGGGCTCAAGGAACCCAAGAGAGTGGAAGAGCTACAAAACAAAATTGTAAATTGTCTTAAAGA
CCATGTGACTTTCAATAATGGGGGTTTGAACCGACCCAACTACCTGTCTAAACTGTTGGGGAAGCTGCCA
GAACTCCGCACCCTTTGCACACAGGGCCTCCAGCGCATTTTCTACCTGAAATTGGAAGACTTGGTACCAC
CACCAGCAATAATTGACAAACTTTTCCTGGACACCTTACCTTTCTAA

Translation (598 aa):
MPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEITATTSLPSFSTFMDNYSTG
YDVKPPCLYQMPLSGQQSSIKVEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSSPPTPSTPSFQVQHS
PMWDDPGSLHNFHQNYVATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLHVPMNPEPAGSH
HVVDGQTFAVPNPIRKPASMGFPGLQIGHASQLLDTQVPSPPSRGSPSNEGLCAVCGDNAACQHYGVRTC
EGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK
SPQDPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGW
AEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFS
SNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLP
ELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLDTLPF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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