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Report for CCDS48368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48368.1 Public Mus musculus 1 Chi3l1 23 108 98 CCDS HistoryNCBI Gene:12654Re-query CCDS DB by CCDS ID:48368.1Re-query CCDS DB by GeneID:12654See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082060.9 ENSMUSP00000080717.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082060.9Link to Ensembl Protein Viewer:ENSMUSP00000080717.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000082060Re-query CCDS DB by Protein ID:ENSMUSP00000080717
Original member NCBI NM_007695.3 NP_031721.2 Updated not alive Link to Nucleotide Sequence:NM_007695.3Link to Protein Sequence:NP_031721.2Re-query CCDS DB by Nucleotide ID:NM_007695Re-query CCDS DB by Protein ID:NP_031721
Current member NCBI NM_007695.4 NP_031721.2 Accepted alive Link to Nucleotide Sequence:NM_007695.4Link to Protein Sequence:NP_031721.2Re-query CCDS DB by Nucleotide ID:NM_007695Re-query CCDS DB by Protein ID:NP_031721Link to BLAST:NP_031721.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031721.2 389 Q61362-1 389 100% 0 0

Chromosomal Locations for CCDS 48368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134182504 134182552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134182780 134182809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134183497 134183701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134184124 134184180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134185149 134185299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134186505 134186626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134187870 134187993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134188495 134188677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134189197 134189313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134189481 134189612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCACACCTCTACTGAAGCCAGGATGGGCATGAGGGCGGCACTGACAGGCTTTGCGGTCCTGATGCTGC
TCCAGAGCTGCTCTGCGTACAAGCTGGTCTGCTACTTCACCAGCTGGTCCCAGTACCGGGAAGGCGTTGG
AAGCTTCTTACCAGACGCCATCCAACCTTTCCTGTGCACCCACATCATCTACAGCTTTGCCAACATCAGC
AGCGACAACATGCTTAGCACATGGGAGTGGAATGACGAGTCGAACTATGACAAGCTGAATAAACTGAAGA
CCAGAAACACCAACCTGAAGACCCTCCTGTCTGTTGGAGGGTGGAAATTTGGCGAAAAAAGATTTTCCGA
GATTGCCTCCAACACTGAGAGACGCACTGCTTTCGTCCGGTCGGTAGCCCCGTTCCTGCGTTCTTATGGC
TTTGATGGGCTGGATCTCGCCTGGCTCTACCCTCGCTTAAGAGACAAGCAGTATTTCTCCACCCTGATCA
AGGAACTGAATGCGGAATTCACAAAGGAGGTCCAGCCAGGCAGAGAGAAACTCCTGCTCAGCGCAGCTTT
GTCAGCAGGAAAGGTGGCCATTGACACTGGCTATGACATCGCCCAGATAGCCCAACACCTGGATTTTATC
AATCTCATGACCTACGATTTCCATGGAGTCTGGCGCCAAATCACAGGCCATCACAGCCCCCTCTTCCAAG
GCCAGAAGGACACTAGGTTTGACAGATACAGCAATGTGAACTATGCCGTGCAGTACATGATACGTCTGGG
AGCCCAGGCCAGCAAGCTACTGATGGGCATCCCCACCTTTGGGAAGAGCTTCACTCTGGCATCTTCTGAA
AATCAGTTGGGAGCTCCAATCTCAGGGGAAGGATTACCAGGCCGGTTCACCAAGGAGGCAGGGACCCTGG
CCTACTACGAGATATGCGACTTCCTCAAAGGAGCTGAAGTACATCGACTCTCCAACGAGAAGGTTCCCTT
CGCTACCAAGGGCAACCAGTGGGTGGGGTATGAGGACAAGGAGAGTGTCAAAAACAAGGTTGGGTTCCTG
AAGGAGAAGAAGCTGGCAGGAGCCATGGTGTGGGCACTGGATTTGGATGATTTCCAGGGCACCTGTCAGC
CGAAGGAATTCTTCCCGCTCACCAACGCCATCAAGGATGCCCTGGCTTAG

Translation (389 aa):
MHTSTEARMGMRAALTGFAVLMLLQSCSAYKLVCYFTSWSQYREGVGSFLPDAIQPFLCTHIIYSFANIS
SDNMLSTWEWNDESNYDKLNKLKTRNTNLKTLLSVGGWKFGEKRFSEIASNTERRTAFVRSVAPFLRSYG
FDGLDLAWLYPRLRDKQYFSTLIKELNAEFTKEVQPGREKLLLSAALSAGKVAIDTGYDIAQIAQHLDFI
NLMTYDFHGVWRQITGHHSPLFQGQKDTRFDRYSNVNYAVQYMIRLGAQASKLLMGIPTFGKSFTLASSE
NQLGAPISGEGLPGRFTKEAGTLAYYEICDFLKGAEVHRLSNEKVPFATKGNQWVGYEDKESVKNKVGFL
KEKKLAGAMVWALDLDDFQGTCQPKEFFPLTNAIKDALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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