NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49290.1 Public Mus musculus 13 Ctla2a 23 108 98 CCDS HistoryNCBI Gene:13024Re-query CCDS DB by CCDS ID:49290.1Re-query CCDS DB by GeneID:13024See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021880.9 ENSMUSP00000021880.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021880.9Link to Ensembl Protein Viewer:ENSMUSP00000021880.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021880Re-query CCDS DB by Protein ID:ENSMUSP00000021880
Original member Current member NCBI NM_007796.2 NP_031822.2 Accepted alive Link to Nucleotide Sequence:NM_007796.2Link to Protein Sequence:NP_031822.2Re-query CCDS DB by Nucleotide ID:NM_007796Re-query CCDS DB by Protein ID:NP_031822Link to BLAST:NP_031822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031822.2 137 P12399 137 100% 0 0

Chromosomal Locations for CCDS 49290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 60935020 60935028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60935330 60935452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60935547 60935669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60935958 60936075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60936491 60936531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGATGGTTTCTATCTGTGAACAGAAGCTGCAGCACTTCAGTGCTGTCTTCCTGCTCATCCTCTGCTTGG
GAATGATGTCAGCTGCTCCACCCCCTGATCCAAGTTTGGATAATGAGTGGAAAGAATGGAAGACGAAATT
TGCAAAAGCCTACAATCTGAATGAAGAAAGACACAGAAGACTCGTGTGGGAGGAGAATAAGAAGAAAATT
GAGGCACACAATGCAGACTATGAGCAGGGCAAGACCAGCTTCTACATGGGCCTGAATCAATTTAGTGACT
TGACTCCAGAAGAATTCAAGACAAATTGCTATGGAAACTCACTGAATAGAGGAGAAATGGCTCCTGATTT
GCCTGAATATGAAGATTTGGGAAAGAACAGCTATCTGACACCTGGAAGGGCTCAGCCAGAGTAA

Translation (137 aa):
MMVSICEQKLQHFSAVFLLILCLGMMSAAPPPDPSLDNEWKEWKTKFAKAYNLNEERHRRLVWEENKKKI
EAHNADYEQGKTSFYMGLNQFSDLTPEEFKTNCYGNSLNRGEMAPDLPEYEDLGKNSYLTPGRAQPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH