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Report for CCDS51331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51331.1 Public Mus musculus 4 Kdm1a 23 108 98 CCDS HistoryNCBI Gene:99982Re-query CCDS DB by CCDS ID:51331.1Re-query CCDS DB by GeneID:99982See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116273.8 ENSMUSP00000111977.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116273.8Link to Ensembl Protein Viewer:ENSMUSP00000111977.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116273Re-query CCDS DB by Protein ID:ENSMUSP00000111977
Original member Current member NCBI NM_133872.2 NP_598633.2 Accepted alive Link to Nucleotide Sequence:NM_133872.2Link to Protein Sequence:NP_598633.2Re-query CCDS DB by Nucleotide ID:NM_133872Re-query CCDS DB by Protein ID:NP_598633Link to BLAST:NP_598633.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598633.2 853 Q6ZQ88 853 100% 0 0

Chromosomal Locations for CCDS 51331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136550848 136551033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136551872 136552018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136552461 136552588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136553796 136553910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136554213 136554400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136555173 136555305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136557642 136557753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136558498 136558571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136559173 136559307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136560323 136560413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136561018 136561160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136568573 136568667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136570458 136570539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136572218 136572324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136573073 136573165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136574025 136574103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136577071 136577204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136592965 136593130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136602232 136602585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTTGTCTGGGAAGAAGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGGCTGCTGGGACCGAGG
CCGGGTCCGGGGCGGCGGGCGGTGCCGAGAACGGCTCTGAGGTGGCCGCGCCGCCCGCGGGCCTGACGGG
CCCCACCGACATGGCTACGGGGGCGGCGGGCGAGCGCACTCCCCGAAAGAAGGAGCCTCCGCGGGCCTCG
CCGCCCGGGGGCCTAGCCGAGCCGCCGGGGTCTGCTGGGCCCCAGGCGGGGCCCACAGCCGGGCCCGGCT
CCGCGACGCCCATGGAGACCGGAATAGCCGAGACCCCGGAGGGCCGACGGACCAGCCGGCGCAAGCGGGC
CAAGGTAGAATACAGAGAAATGGATGAAAGCTTGGCCAACCTCTCAGAAGATGAATATTATTCGGAAGAA
GAAAGAAATGCTAAAGCAGAGAAGGAAAAGAAGCTTCCCCCACCACCTCCTCAAGCCCCACCTGAGGAAG
AAAATGAAAGTGAGCCGGAAGAGCCGTCTGGTGTGGAGGGTGCAGCTTTTCAAAGCCGACTTCCCCATGA
CCGAATGACCTCTCAGGAAGCAGCCTGTTTCCCAGACATCATCAGTGGGCCTCAGCAGACACAGAAGGTT
TTTCTGTTCATCAGGAATCGCACATTGCAGTTATGGCTGGACAACCCAAAGATCCAGCTGACGTTTGAAG
CCACTCTCCAGCAGCTGGAAGCGCCTTACAACAGCGATACTGTGCTTGTCCACCGAGTTCACAGTTACTT
AGAGCGCCATGGTCTTATCAACTTCGGCATCTACAAGAGGATAAAACCCTTACCAATTAAAAAGACAGGA
AAGGTGATTATTATAGGTTCAGGTGTTTCTGGCTTGGCAGCAGCTCGACAGCTACAGAGTTTTGGGATGG
ATGTCACACTTCTGGAAGCCAGGGATCGAGTAGGTGGACGAGTTGCTACATTTCGAAAAGGAAACTATGT
AGCTGATCTTGGCGCCATGGTTGTAACAGGTCTTGGAGGGAATCCCATGGCTGTCGTCAGCAAACAAGTA
AATATGGAACTGGCCAAGATCAAGCAAAAATGCCCACTTTATGAAGCCAATGGACAAGCTGTTCCAAAAG
AAAAAGATGAAATGGTAGAACAAGAATTTAACCGGTTGCTAGAAGCCACTTCTTACCTTAGTCACCAGTT
AGACTTCAACGTCCTCAATAATAAACCTGTATCCCTTGGCCAGGCATTGGAGGTTGTCATTCAGCTGCAA
GAAAAGCATGTCAAAGATGAGCAGATTGAACATTGGAAGAAGATAGTGAAAACTCAGGAGGAGTTGAAAG
AGCTTCTTAATAAGATGGTAAATTTGAAGGAGAAAATTAAAGAGCTCCATCAGCAATACAAAGAAGCTTC
AGAAGTGAAGCCGCCCAGAGATATCACAGCCGAGTTCCTGGTGAAGAGCAAGCACAGGGACCTGACTGCC
CTCTGCAAGGAATATGATGAATTAGCTGAAACACAAGGAAAGCTAGAAGAAAAACTTCAAGAATTGGAAG
CCAATCCCCCAAGTGATGTATACCTCTCATCAAGAGACAGACAAATACTTGACTGGCATTTTGCAAATCT
TGAATTTGCCAACGCCACACCTCTCTCTACCCTCTCTCTTAAACATTGGGATCAGGATGATGACTTTGAG
TTTACTGGAAGCCACCTGACAGTAAGGAATGGCTACTCATGTGTGCCTGTGGCTTTAGCTGAAGGCTTGG
ACATTAAACTGAACACAGCAGTGCGGCAGGTTCGCTACACAGCCTCAGGATGTGAAGTGATTGCTGTGAA
CACACGTTCCACAAGTCAAACCTTTATTTATAAGTGTGATGCAGTTCTCTGTACACTTCCTTTGGGAGTG
TTGAAGCAGCAGCCACCAGCTGTTCAGTTTGTGCCACCTCTTCCTGAGTGGAAAACATCTGCAGTCCAAA
GGATGGGATTTGGCAACCTTAACAAGGTGGTGTTATGCTTTGACCGTGTGTTCTGGGACCCAAGTGTCAA
TTTGTTTGGGCACGTTGGCAGTACAACTGCTAGCAGGGGTGAGCTCTTCCTCTTCTGGAACCTATATAAA
GCTCCAATACTATTGGCCCTGGTAGCAGGAGAAGCTGCTGGCATTATGGAGAACATTAGTGATGATGTGA
TTGTCGGCCGGTGCCTGGCCATTCTCAAAGGGATTTTTGGCAGCAGTGCAGTCCCACAGCCCAAGGAAAC
TGTGGTATCTCGTTGGCGTGCTGATCCGTGGGCCCGGGGCTCCTATTCTTATGTGGCTGCAGGATCCTCT
GGAAATGACTATGATTTAATGGCTCAGCCGATCACTCCTGGCCCCTCAATTCCAGGTGCCCCACAGCCAA
TCCCAAGACTCTTCTTTGCTGGAGAACACACAATCCGGAACTACCCAGCTACAGTCCATGGTGCTCTGTT
GAGTGGGCTTCGAGAAGCAGGAAGGATTGCCGACCAGTTTTTGGGAGCCATGTACACTTTGCCTCGTCAG
GCCACACCAGGTGTCCCTGCACAGCAGTCCCCAAGTATGTGA

Translation (853 aa):
MLSGKKAAAAAAAAAAAAAAGTEAGSGAAGGAENGSEVAAPPAGLTGPTDMATGAAGERTPRKKEPPRAS
PPGGLAEPPGSAGPQAGPTAGPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEE
ERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKV
FLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPIKKTG
KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQV
NMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQ
EKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTA
LCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE
FTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV
LKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYK
APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSS
GNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPRQ
ATPGVPAQQSPSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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