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Report for CCDS24112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24112.1 Public Mus musculus 10 Chpt1 23 108 98 CCDS HistoryNCBI Gene:212862Re-query CCDS DB by CCDS ID:24112.1Re-query CCDS DB by GeneID:212862See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020253.14 ENSMUSP00000020253.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020253.14Link to Ensembl Protein Viewer:ENSMUSP00000020253.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020253Re-query CCDS DB by Protein ID:ENSMUSP00000020253
Original member Current member EBI ENSMUST00000139109.7 ENSMUSP00000116413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139109.7Link to Ensembl Protein Viewer:ENSMUSP00000116413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139109Re-query CCDS DB by Protein ID:ENSMUSP00000116413
Original member Current member NCBI NM_144807.3 NP_659056.3 Accepted alive Link to Nucleotide Sequence:NM_144807.3Link to Protein Sequence:NP_659056.3Re-query CCDS DB by Nucleotide ID:NM_144807Re-query CCDS DB by Protein ID:NP_659056Link to BLAST:NP_659056.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659056.3 398 Q8C025-1 398 100% 0 0

Chromosomal Locations for CCDS 24112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88475405 88475536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88476348 88476473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88477010 88477168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88480815 88480946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88482231 88482315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88488382 88488523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88489581 88489728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88503585 88503857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGCGGCGGGCGCCGGGGCCAGGCCGGCGCCGCGCTGGGTAAAGGCGCTAGGTGAGCCGCTCAGTGCCG
CGCAGCTGCGGCGGCTGGAGGAGCACCGCTACACCGCGGTGGGAGAGTCGCTGTTCGAGCCGCCGCTGCA
GCTTTACTGGACCTGGCTGCTCCAATGGATCCCGCTCTGGATGGCCCCCAACACCATCACCCTCATCGGC
CTCGCCATCAACCTGGTCACCACACTAGTGCTCATCTTCTACTGCCCTACAGTCACGGAGGAGGCACCAT
ACTGGACATACCTTTTATGTGCCCTGGGACTCTTTATCTACCAGTCACTGGATGCCATTGATGGGAAACA
AGCCAGAAGGACAAACTCTTGCTCTCCCTTAGGGGAACTATTTGATCATGGTTGTGACTCTCTTTCCACA
GTATTTATGGCCATCGGCGCTTCCATTGCTGTTCGCCTAGGAACACATCCTGACTGGTTGTTTTTCTGCT
CTTTCGTTGGGATGTTCATGTTTTACTGTGCTCATTGGCAGACTTACGTCTCAGGAGTGTTAAGATTTGG
AAGGGTGGATGTCACTGAGATCCAGGTAGCTTTAGTGATCGTCTTCATGTTGTCAACATTTGGAGGAGCA
ACAATGTGGGACTATACGATACCTATTCTAGAAATAAAACTGAAGATTGTTCCGGTTCTTGGAGTTGTAG
GTGGATTAATATTTTCCTGTTCAAATTATTTCCATGTGATCCTCCATGGTGGTGTTGGCAAGAATGGGTC
TACTATTGCAGGCACCAGTGTCTTGTCACCTGGACTCCACATAGGATTAATTATTATATTGGCAATAATG
ATCTATAAGAAGTCTGCAACAAATATGTTTGAAAAACATCCTTGCCTTTATACTTTAATGTTTGGATGTG
TCTTTGCTAAAGTTGCACAAAAATTGGTGATAGCTCACATGACGAAAAGTGAACTATATCTTCAAGACAC
TGTCTTTATTGGGCCAGGTCTTTTATTTTTAGACCAATACTTTAATAATTTTATAGATGAATATGTTGTT
CTGTGGATAGCAATGGTCATTTCTTCATTTGATATGATGATATACTTTACTTCTTTGTGCCTGCAAATTT
CAAGACACCTTCATCTAAACATCTTCAAGACTTCATGTCAACAAGCACCGGAACAGGTTTACAAGCATAT
TGACTGA

Translation (398 aa):
MAAGAGARPAPRWVKALGEPLSAAQLRRLEEHRYTAVGESLFEPPLQLYWTWLLQWIPLWMAPNTITLIG
LAINLVTTLVLIFYCPTVTEEAPYWTYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLST
VFMAIGASIAVRLGTHPDWLFFCSFVGMFMFYCAHWQTYVSGVLRFGRVDVTEIQVALVIVFMLSTFGGA
TMWDYTIPILEIKLKIVPVLGVVGGLIFSCSNYFHVILHGGVGKNGSTIAGTSVLSPGLHIGLIIILAIM
IYKKSATNMFEKHPCLYTLMFGCVFAKVAQKLVIAHMTKSELYLQDTVFIGPGLLFLDQYFNNFIDEYVV
LWIAMVISSFDMMIYFTSLCLQISRHLHLNIFKTSCQQAPEQVYKHID


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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