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Report for CCDS25496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25496.1 Public Mus musculus 11 Slc4a1 23 108 98 CCDS HistoryNCBI Gene:20533Re-query CCDS DB by CCDS ID:25496.1Re-query CCDS DB by GeneID:20533See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006749.9 ENSMUSP00000006749.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006749.9Link to Ensembl Protein Viewer:ENSMUSP00000006749.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000006749Re-query CCDS DB by Protein ID:ENSMUSP00000006749
Original member Current member NCBI NM_011403.2 NP_035533.1 Accepted alive Link to Nucleotide Sequence:NM_011403.2Link to Protein Sequence:NP_035533.1Re-query CCDS DB by Nucleotide ID:NM_011403Re-query CCDS DB by Protein ID:NP_035533Link to BLAST:NP_035533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035533.1 929 P04919-1 929 100% 0 0

Chromosomal Locations for CCDS 25496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102350287 102350367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102351102 102351275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102351357 102351526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102352439 102352692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102353191 102353357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102353824 102353913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102354266 102354436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102356077 102356271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102356380 102356528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102356717 102356929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102357041 102357251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102357923 102358104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102358218 102358299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102358404 102358527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102359010 102359145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102359225 102359405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102360147 102360220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102361141 102361261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102361381 102361395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGGGGACATGCGGGACCACGAGGAAGTGCTGGAGATCCCAGATCGAGACAGCGAAGAAGAACTGGAGA
AC
ATAATAGGACAGATAGCATATAGAGACCTAACCATCCCTGTGACCGAGATGCAGGACCCAGAAGCTCT
T
CCCACAGAGCAAACAGCCACAGACTACGTCCCCAGCAGTACCTCCACACCGCACCCAAGCTCCGGTCAG
GTC
TATGTGGAGCTTCAGGAACTGATGATGGACCAGAGGAACCAGGAACTACAATGGGTGGAGGCAGCGC
AC
TGGATAGGGCTGGAGGAAAACCTTCGAGAGGATGGTGTATGGGGTCGCCCACATCTATCTTACCTGAC
C
TTCTGGAGCCTTCTAGAACTGCAGAAGGTCTTCTCAAAAGGCACCTTCCTTCTGGGTCTGGCAGAGACA
TCC
CTGGCTGGGGTGGCCAATCACCTTCTAGACTGCTTCATCTACGAGGATCAGATTCGGCCTCAGGACC
GA
GAAGAACTGCTCCGGGCTCTGCTACTCAAACGCAGCCATGCTGAGGACCTAGGGAATCTGGAGGGGGT
G
AAGCCCGCCGTCCTGACCCGCTCTGGGGGCGCCTCTGAGCCTCTGCTTCCTCACCAGCCATCGCTGGAG
ACC
CAGCTGTACTGCGGACAGGCAGAGGGGGGCTCAGAAGGACCCTCAACATCTGGGACTCTGAAGATCC
CC
CCAGATTCAGAAACCACACTGGTGCTAGTGGGCCGGGCTAATTTTCTGGAGAAGCCTGTACTGGGCTT
C
GTGAGACTGAAGGAGGCCGTGCCTCTGGAGGACCTGGTGTTGCCAGAGCCTGTGGGCTTCCTTCTTGTT
CTG
CTGGGACCTGAGGCTCCGCATGTCGACTATACCCAGCTGGGCAGGGCTGCAGCAACTCTCATGACAG
AA
AGAGTGTTCCGCATTACCGCCTCCATGGCGCATAACCGAGAGGAGCTGCTGCGCTCTCTGGAGAGCTT
T
CTGGACTGTAGCCTGGTGCTGCCGCCCACAGACGCCCCTTCAGAAAAAGCTCTGCTTAACCTGGTACCG
GTG
CAGAAGGAGCTGCTTAGGAGGCGGTACCTGCCCAGCCCCGCCAAGCCAGACCCCAACTTGTACAACA
CT
CTAGACTTGAACGGGGGAAAAGGGGGCCCTGGTGACGAAGACGACCCTCTACGGCGCACAGGCCGGAT
C
TTTGGAGGCCTGATCCGTGATATCCGGCGCCGTTATCCTTACTACCTGAGTGACATCACCGATGCGCTC
AGT
CCCCAGGTGTTGGCTGCTGTCATCTTCATCTACTTTGCTGCCTTGTCACCTGCCGTCACCTTCGGCG
GC
CTCCTGGGAGAAAAGACCCGGAACTTGATGGGGGTGTCGGAGCTGCTCATCTCCACAGCAGTGCAAGG
C
ATTCTCTTTGCTCTCCTGGGGGCACAGCCCCTGCTTGTGCTAGGCTTCTCAGGACCCCTGCTGGTGTTT
GAA
GAAGCCTTCTTCTCGTTCTGTGAAAGCAATAACCTGGAGTATATCGTGGGCCGCGCGTGGATCGGCT
TC
TGGCTCATCCTGCTCGTGATGTTGGTGGTGGCCTTTGAAGGCAGCTTCCTCGTCCAATACATCTCCCG
A
TACACCCAGGAGATCTTCTCCTTCCTCATCTCCCTCATCTTCATCTATGAGACTTTCTCCAAGCTGATC
AAG
ATTTTCCAGGACTACCCACTACAACAGACTTATGCCCCTGTTGTGATGAAGCCCAAACCTCAGGGCC
CT
GTGCCCAACACAGCCCTCTTCTCTCTTGTGCTCATGGCTGGCACCTTCCTACTTGCCATGACGCTACG
A
AAGTTCAAGAACAGCACCTACTTCCCTGGCAAGCTGCGTAGAGTCATTGGGGACTTCGGGGTCCCCATC
TCC
ATCCTGATAATGGTCCTGGTGGATTCCTTCATCAAGGGCACCTACACACAGAAACTCTCCGTGCCTG
AT
GGCCTCAAAGTGTCCAACTCCTCCGCCCGGGGCTGGGTCATCCACCCTCTGGGGCTGTATAGACTTTT
C
CCCACGTGGATGATGTTTGCCTCCGTTCTGCCCGCCCTGCTTGTCTTCATTCTCATTTTCCTTGAGTCT
CAG
ATCACCACGCTGATTGTCAGTAAACCAGAACGGAAGATGATCAAGGGCTCTGGCTTCCACCTGGACC
TG
TTGCTGGTCGTTGGCATGGGTGGGGTGGCTGCCCTCTTTGGGATGCCTTGGCTCAGTGCCACCACTGT
A
AGATCTGTTACCCACGCCAATGCCCTCACAGTCATGGGGAAGGCCAGTGGTCCAGGGGCTGCAGCCCAG
ATC
CAAGAGGTCAAGGAACAGCGGATCAGTGGGCTCCTGGTCTCTGTGCTTGTGGGACTGTCCATCCTCA
TG
GAACCTATCCTGTCCCGCATCCCCCTGGCTGTGCTCTTCGGCATCTTCCTGTACATGGGAGTCACATC
C
CTCAGTGGCATCCAGCTCTTTGACCGCATCTTGCTCCTGTTCAAGCCACCCAAGTACCACCCGGATGTG
CCC
TTTGTCAAGAGGGTGAAGACCTGGCGCATGCACCTCTTCACGGGCATCCAGATCATCTGCCTGGCTG
TG
CTGTGGGTGGTGAAGTCCACTCCTGCCTCGCTGGCCTTGCCCTTCGTCCTCATCCTCACAGTGCCTCT
C
CGTCGTCTCATCCTCCCGCTCATCTTCAGAGAGCTGGAACTCCAGTGTCTGGACGGTGATGATGCCAAA
GTG
ACCTTTGACGAGGAGAATGGCCTGGATGAATATGACGAAGTGCCCATGCCTGTGTGA


Translation (929 aa):
MGDMRDHEEVLEIPDRDSEEELENIIGQIAYRDLTIPVTEMQDPEALPTEQTATDYVPSSTSTPHPSSGQ
V
YVELQELMMDQRNQELQWVEAAHWIGLEENLREDGVWGRPHLSYLTFWSLLELQKVFSK
GTFLLGLAET
S
LAGVANHLLDCFIYEDQIRPQDREELLRALLLKR
SHAEDLGNLEGVKPAVLTRSGGASEPLLPHQPSLE
T
QLYCGQ
AEGGSEGPSTSGTLKIPPDSETTLVLVGRANFLEKPVLGFVRLKEAVPLEDLVLPEPVGFLLV
L
LGPEAPHVDYTQLGRAAATLMTER
VFRITASMAHNREELLRSLESFLDCSLVLPPTDAPSEKALLNLVP
V
QKELLRRRYLPSPAKPDPNLYNTL
DLNGGKGGPGDEDDPLRRTGRIFGGLIRDIRRRYPYYLSDITDAL
S
PQVLAAVIFIYFAALSPAVTFGGLL
GEKTRNLMGVSELLISTAVQGILFALLGAQPLLVLGFSGPLLVF
E
EAFFS
FCESNNLEYIVGRAWIGFWLILLVMLVVAFEGSFLVQYISRYTQEIFSFLISLIFIYETFSKLI
K
IFQDYPLQQTYAPVVMKPKPQGPVPNTALFSLVLMAGTFLLAMTLRKFKNSTYFPGKLRRVIGDFGVPI
S
ILIMVLVDSFIKGTYTQ
KLSVPDGLKVSNSSARGWVIHPLGLYRLFPTWMMFASVLPALLVFILIFLES
Q
IT
TLIVSKPERKMIKGSGFHLDLLLVVGMGGVAALFGMPWLSATTVRSVTHANALTVMGKASGPGAAAQ
I
QEVKEQRISGLLVSVLV
GLSILMEPILSRIPLAVLFGIFLYMGVTSLSGIQLFDRILLLFKPPKYHPDV
P
FVKR
VKTWRMHLFTGIQIICLAVLWVVKSTPASLALPFVLILTVPLRRLILPLIFRELELQCLDGDDAK
V
TFDEENGLDEYDEVPMPV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser