NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19615.1 Public Mus musculus 5 Tbx5 23 108 98 CCDS HistoryNCBI Gene:21388Re-query CCDS DB by CCDS ID:19615.1Re-query CCDS DB by GeneID:21388See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018407.9 ENSMUSP00000018407.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018407.9Link to Ensembl Protein Viewer:ENSMUSP00000018407.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018407Re-query CCDS DB by Protein ID:ENSMUSP00000018407
Original member Current member NCBI NM_011537.3 NP_035667.1 Accepted alive Link to Nucleotide Sequence:NM_011537.3Link to Protein Sequence:NP_035667.1Re-query CCDS DB by Nucleotide ID:NM_011537Re-query CCDS DB by Protein ID:NP_035667Link to BLAST:NP_035667.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035667.1 518 P70326 518 100% 0 0

Chromosomal Locations for CCDS 19615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 119836914 119837060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119838696 119838790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119840767 119840886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119841753 119841900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119844965 119845117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119853529 119853620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119871183 119871409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119882913 119883487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGCCGATACAGATGAGGGCTTTGGCCTGGCGCGCACGCCTCTGGAGCCTGATTCCAAAGACAGGTCTT
GCGATTCGAAACCTGAGAGTGCTCTGGGGGCTCCCAGCAAGTCTCCATCATCCCCGCAGGCTGCCTTCAC
CCAGCAGGGCATGGAAGGAATCAAGGTGTTTCTTCATGAACGTGAACTGTGGCTGAAGTTCCACGAAGTG
GGCACAGAGATGATCATCACCAAGGCAGGGAGGAGAATGTTTCCTAGTTACAAAGTGAAGGTGACTGGCC
TTAATCCCAAAACGAAGTATATTCTTCTCATGGATATTGTTCCCGCAGACGACCACAGATATAAATTTGC
TGATAACAAATGGTCCGTAACTGGCAAAGCAGAGCCTGCCATGCCGGGGCGCCTTTACGTGCACCCGGAC
TCCCCAGCAACCGGAGCCCACTGGATGCGACAACTTGTCTCCTTCCAGAAGCTCAAACTCACCAACAACC
ACCTGGACCCGTTTGGACACATTATCCTGAACTCCATGCACAAATACCAGCCCCGATTACACATCGTGAA
AGCAGACGAAAATAATGGGTTCGGTTCAAAGAACACTGCGTTTTGCACCCACGTCTTCCCGGAGACAGCT
TTTATCGCTGTGACTTCGTACCAGAATCACAAGATCACACAGCTGAAAATTGAGAACAACCCCTTCGCCA
AAGGCTTTCGGGGCAGTGATGACCTGGAGTTACACAGGATGTCTCGGATGCAAAGTAAAGAGTATCCTGT
GGTTCCCAGGAGCACAGTGAGGCACAAAGTCACCTCCAACCACAGCCCCTTCAGCAGCGAGACCCGAGCT
CTCTCCACCTCATCCAATTTAGGGTCCCAGTACCAGTGTGAGAATGGTGTCTCTGGCCCCTCCCAGGACC
TTCTGCCCCCACCTAACCCATACCCACTGGCCCAGGAGCACAGCCAAATTTACCACTGTACCAAGAGGAA
AGATGAGGAATGTTCCAGCACGGAGCACCCCTATAAGAAGCCGTACATGGAGACATCCCCCAGCGAGGAA
GACACCTTCTATCGCTCGGGCTACCCCCAGCAGCAGGGCCTGAGTACCTCTTACAGGACAGAGTCGGCCC
AGCGGCAGGCCTGCATGTATGCCAGCTCCGCTCCCCCCAGCGAGCCCGTGCCTAGCCTGGAGGACATCAG
CTGTAACACATGGCCCAGCATGCCCTCCTATAGCAGCTGTACCGTCACCACCGTGCAGCCCATGGACCGT
CTTCCCTACCAGCACTTCTCCGCTCATTTCACCTCGGGGCCCCTGGTCCCTCGGTTGGCTGGCATGGCCA
ACCATGGTTCTCCCCAGCTCGGCGAAGGGATGTTTCAGCACCAGACCTCAGTGGCCCATCAGCCTGTGGT
CAGGCAGTGCGGGCCTCAGACTGGCCTTCAGTCTCCGGGCGGCCTCCAGCCCCCAGAGTTTCTCTACACT
CACGGCGTGCCCAGGACCCTGTCCCCCCATCAGTATCACTCGGTACACGGCGTCGGCATGGTGCCAGAGT
GGAGTGAGAATAGCTAA

Translation (518 aa):
MADTDEGFGLARTPLEPDSKDRSCDSKPESALGAPSKSPSSPQAAFTQQGMEGIKVFLHERELWLKFHEV
GTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHPD
SPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFPETA
FIAVTSYQNHKITQLKIENNPFAKGFRGSDDLELHRMSRMQSKEYPVVPRSTVRHKVTSNHSPFSSETRA
LSTSSNLGSQYQCENGVSGPSQDLLPPPNPYPLAQEHSQIYHCTKRKDEECSSTEHPYKKPYMETSPSEE
DTFYRSGYPQQQGLSTSYRTESAQRQACMYASSAPPSEPVPSLEDISCNTWPSMPSYSSCTVTTVQPMDR
LPYQHFSAHFTSGPLVPRLAGMANHGSPQLGEGMFQHQTSVAHQPVVRQCGPQTGLQSPGGLQPPEFLYT
HGVPRTLSPHQYHSVHGVGMVPEWSENS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH