NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20227.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20227.2 Public Mus musculus 6 Smyd1 23 108 98 CCDS HistoryNCBI Gene:12180Re-query CCDS DB by CCDS ID:20227.2Re-query CCDS DB by GeneID:12180See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20227.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20227.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114186.8 ENSMUSP00000109824.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114186.8Link to Ensembl Protein Viewer:ENSMUSP00000109824.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114186Re-query CCDS DB by Protein ID:ENSMUSP00000109824
Original member Current member NCBI NM_009762.2 NP_033892.2 Accepted alive Link to Nucleotide Sequence:NM_009762.2Link to Protein Sequence:NP_033892.2Re-query CCDS DB by Nucleotide ID:NM_009762Re-query CCDS DB by Protein ID:NP_033892Link to BLAST:NP_033892.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033892.2 477 P97443-2 477 100% 0 0

Chromosomal Locations for CCDS 20227.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71215751 71215909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71216728 71216896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71219258 71219421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71220928 71221020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71225332 71225521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71237357 71237487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71238548 71238761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71239550 71239726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71262068 71262204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGACAATAGGCAGCATGGAGAACGTGGAGGTCTTCACTTCCGAGGGCAAAGGCAGAGGTCTGAAGGCTA
CG
AAGGAGTTCTGGGCTGCGGATGTCATCTTTGCGGAGAGGGCTTATTCTGCAGTGGTTTTTGACAGCCT
C
ATTAACTTCGTGTGCCACACCTGCTTCAAGAGGCAGGAGAAGCTCCATCGCTGCGGGCAGTGCAAGTTC
GCC
CATTACTGCGACCGCACGTGCCAGAAGGATGCTTGGCTGAATCACAAGAACGAGTGCGCTGCCATCA
AG
AAATATGGGAAAGTGCCCAACGAGAACATCAGGCTGGCCGCCCGCATCATGTGGCGGGTGGAGAGAGA
G
GGCACTGGGCTCACAGAGGGCTGCCTGGTGTCCGTGGATGACTTACAGAACCACGTGGAGCACTTTGGG
GAG
GAGGAGCAGAAGGAACTCCGAGTAGACGTGGACACGTTCTTGCAGTACTGGCCACCACAGAGCCAGC
AG
TTCAGCATGCAGTATATCTCACACATCTTTGGTGTGATCAACTGCAACGGTTTCACTCTCAGTGACCA
G
AGAGGGCTACAGGCAGTAGGTGTGGGCATCTTCCCCAACCTGGGCCTGGTGAACCATGATTGCTGGCCA
AAC
TGCACTGTCATATTCAACAATGGCAAGATTGAGCTCCGGGCCCTGGGCAAGATCTCAGAAGGCGAGG
AG
CTGACTGTGTCCTACATAGACTTCCTGCACCTCAGTGAGGAGCGCAGGCGGCAGCTGAAGAAACAGTA
C
TACTTTGACTGCTCCTGTGAGCACTGCCAGAAGGGGCTGAAGGACGACCTCTTCCTGGCAGCGAAGGAA
GAC
CCCAAGCCCTCCCAGGAAGTGGTGAAGGAGATGATACAATTCTCAAAGGATACACTGGAAAAAATAG
AC
AAGGCTCGCTCCGAGGGTTTGTATCACGAGGTTGTGAAGCTGTGTCGGGAGTGCCTGGAGAAGCAGGA
G
CCAGTGTTCGCCGACACCAACCTCTACGTGCTTCGGCTGCTCAGCATTGCATCAGAGGTCCTCTCCTAC
CTC
CAGGCCTATGAGGAGGCCTCACATTATGCCAGGAGGATGGTTGATGGCTACATGAAACTCTACCACC
AT
AACAATGCCCAACTGGGCATGGCTGTGATGAGGGCAGGGCTTACCAACTGGCATGCTGGTCACATCGA
A
GTGGGGCATGGGATGATCTGCAAAGCCTATGCTATTCTCCTGGTGACCCATGGACCCTCCCACCCTATC
ACC
AAAGACTTAGAGGCCATGCGGATGCAGACAGAGATGGAGCTGCGTATGTTCCGCCAAAACGAATTCA
TG
TATCACAAGATGCGAGAGGCTGCCCTGAACAACCAGCCCATGCAGGTCATGGCTGAGCCTAGCAATGA
A
CCAGCCCCCGCTCTGTTCCATAAGAAGCAGTGA


Translation (477 aa):
MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKF
A
HYCDRTCQKDAWLNHKNECAAIKKYGKVPNENI
RLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFG
E
EEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGV
INCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWP
N
CTVIFNNG
KIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKE
D
PK
PSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY
L
QAYEEASHYARRMVDGY
MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI
T
KDLE
AMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPSNEPAPALFHKKQ



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser