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Report for CCDS23936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23936.1 Public Mus musculus 10 Smarcb1 23 108 98 CCDS HistoryNCBI Gene:20587Re-query CCDS DB by CCDS ID:23936.1Re-query CCDS DB by GeneID:20587See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000925.9 ENSMUSP00000000925.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000925.9Link to Ensembl Protein Viewer:ENSMUSP00000000925.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000000925Re-query CCDS DB by Protein ID:ENSMUSP00000000925
Original member Current member NCBI NM_011418.2 NP_035548.1 Accepted alive Link to Nucleotide Sequence:NM_011418.2Link to Protein Sequence:NP_035548.1Re-query CCDS DB by Nucleotide ID:NM_011418Re-query CCDS DB by Protein ID:NP_035548Link to BLAST:NP_035548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035548.1 385 Q9Z0H3-1 385 100% 0 0

Chromosomal Locations for CCDS 23936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75897049 75897088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75897445 75897576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75904384 75904574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75906030 75906196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75910154 75910281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75911519 75911656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75915064 75915193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75916773 75916911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75921303 75921395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGATGATGATGGCGTTGAGCAAGACCTTCGGGCAGAAGCCCGTCAAGTTTCAGCTGGAGGACGACGGGG
AGTTCTACATGATCGGCTCCGAGGTGGGAAACTACCTGCGTATGTTCCGAGGTTCTCTGTACAAGAGATA
CCCCTCACTCTGGCGGCGACTAGCCACTGTGGAAGAAAGGAAGAAAATAGTGGCATCGTCACATGGTAAA
AAAACAAAACCTAACACTAAGGATCATGGATATACCACCCTGGCCACCAGCGTGACACTCCTGAAAGCCT
CAGAGGTAGAAGAGATCCTGGATGGCAATGACGAGAAGTACAAGGCTGTGTCCATCAGCACAGAGCCCCC
GACCTACCTCAGGGAGCAGAAGGCCAAGAGGAACAGCCAGTGGGTCCCCACCCTGCCCAACAGCTCCCAC
CACCTGGATGCTGTGCCCTGTTCCACCACCATCAACAGGAACCGCATGGGTCGGGACAAGAAGAGAACCT
TCCCCTTGTGCTTTGATGACCACGACCCAGCTGTGATCCATGAGAATGCGTCACAGCCTGAGGTGCTGGT
GCCCATCCGGCTCGACATGGAGATCGACGGGCAGAAGCTGCGAGACGCTTTTACCTGGAACATGAATGAG
AAGCTAATGACTCCTGAGATGTTTTCAGAAATACTTTGTGATGACCTGGATTTGAATCCACTGACTTTTG
TGCCAGCTATTGCCTCTGCCATTCGACAGCAGATTGAGTCCTACCCCACAGACAGCATCCTAGAGGATCA
ATCCGACCAGCGTGTCATCATCAAGCTGAACATCCACGTGGGGAACATCTCCCTGGTGGACCAGTTTGAG
TGGGACATGTCAGAGAAAGAGAACTCCCCAGAGAAGTTTGCCCTGAAGCTGTGCTCAGAGCTGGGCTTGG
GCGGGGAGTTTGTCACCACCATTGCATACAGCATCCGAGGACAGCTGAGCTGGCACCAGAAGACCTATGC
CTTCAGTGAGAACCCACTTCCCACAGTGGAGATTGCCATCCGAAATACCGGAGATGCTGACCAGTGGTGC
CCCCTGCTGGAGACACTGACTGATGCCGAGATGGAGAAAAAGATCCGGGATCAAGATAGGAACACAAGGC
GAATGAGGCGTCTTGCCAACACTGCCCCAGCCTGGTGA

Translation (385 aa):
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGK
KTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSH
HLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNE
KLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFE
WDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWC
PLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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