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Report for CCDS19039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19039.1 Public Mus musculus 4 Vwa1 23 108 98 CCDS HistoryNCBI Gene:246228Re-query CCDS DB by CCDS ID:19039.1Re-query CCDS DB by GeneID:246228See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042196.3 ENSMUSP00000040405.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042196.3Link to Ensembl Protein Viewer:ENSMUSP00000040405.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042196Re-query CCDS DB by Protein ID:ENSMUSP00000040405
Original member Current member NCBI NM_147776.4 NP_680085.3 Accepted alive Link to Nucleotide Sequence:NM_147776.4Link to Protein Sequence:NP_680085.3Re-query CCDS DB by Nucleotide ID:NM_147776Re-query CCDS DB by Protein ID:NP_680085Link to BLAST:NP_680085.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_680085.3 415 Q8R2Z5-1 415 100% 0 0

Chromosomal Locations for CCDS 19039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155770328 155770665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155770745 155771023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155772709 155773266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155774430 155774502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCTGTTCTGGACTGCGTTCAGCATGGCTTTGAGTCTGCGGTTGGCATTGGCGCGGAGCAGCATAGAGC
GC
GGTTCCACAGCATCAGACCCCCAGGGGGACCTGTTGTTCCTGTTGGACAGCTCAGCCAGCGTGTCACA
C
TATGAGTTCTCAAGAGTTCGGGAATTTGTGGGGCAGCTGGTGGCTACGATGTCTTTCGGACCCGGGGCT
CTG
CGTGCTAGTCTGGTGCACGTGGGCAGCCAGCCTCACACAGAGTTTACTTTTGACCAGTACAGTTCAG
GC
CAGGCTATACAGGATGCCATCCGTGTTGCACCCCAACGTATGGGTGATACCAACACAGGCCTGGCACT
G
GCTTATGCCAAAGAACAATTGTTTGCTGAGGAAGCAGGTGCCCGGCCAGGGGTTCCCAAGGTGCTGGTG
TGG
GTGACAGATGGTGGCTCCAGCGACCCCGTGGGCCCCCCTATGCAGGAGCTCAAGGACCTGGGTGTCA
CC
ATCTTCATTGTCAGCACTGGCCGAGGCAACCTGTTGGAGCTGTTGGCAGCTGCCTCGGCTCCTGCCGA
G
AAGCACCTACACTTTGTGGATGTGGATGATCTTCCTATCATTGCCCGGGAGCTGCGGGGCTCCATAACT
G
AT
GCGATGCAGCCACAACAGCTTCATGCCTCGGAGGTTCTGTCCAGTGGCTTCCGCCTGTCCTGGCCGC
CC
CTGCTGACAGCGGACTCTGGTTACTACGTGCTGGAATTGGTACCTAGCGGCAAACTGGCAACCACAAG
A
CGCCAACAGCTGCCCGGGAATGCTACCAGCTGGACCTGGACAGATCTCGACCCGGACACAGACTATGAA
GTA
TCACTGCTGCCTGAGTCCAACGTGCACCTCCTGAGGCCGCAGCACGTGCGAGTACGCACACTGCAAG
AG
GAGGCCGGGCCAGAACGCATCGTCATCTCGCATGCGAGGCCGCGCAGCCTCCGCGTAAGCTGGGCCCC
C
GCGCTTGGCCCGGACTCCGCTCTCGGCTACCATGTACAGCTCGGACCTCTGCAGGGCGGGTCCCTAGAG
CGC
GTGGAGGTGCCAGCAGGCCAGAACAGCACTACCGTCCAGGGCCTGACGCCCTGCACCACTTACCTGG
TG
ACTGTGACTGCCGCCTTCCGCTCCGGCCGCCAGAGGGCGCTGTCGGCTAAGGCCTGTACGGCCTCTGG
C
GCGCGGACCCGTGCTCCGCAGTCCATGCGGCCGGAGGCTGGACCGCGGGAGCCCTGA


Translation (415 aa):
MLFWTAFSMALSLRLALARSSIERGSTASDPQGDLLFLLDSSASVSHYEFSRVREFVGQLVATMSFGPGA
L
RASLVHVGSQPHTEFTFDQYSSGQAIQDAIRVAPQRMGDTNTGLALAYAKEQLFAEEAGARPGVPKVLV
W
VTDGGSSDPVGPPMQELKDLGVTIFIVSTGRGNLLELLAAASAPAEKHLHFVDVDDLPIIARELRGSIT

D
AMQPQQLHASEVLSSGFRLSWPPLLTADSGYYVLELVPSGKLATTRRQQLPGNATSWTWTDLDPDTDYE
V
SLLPESNVHLLRPQHVRVRTLQ
EEAGPERIVISHARPRSLRVSWAPALGPDSALGYHVQLGPLQGGSLE
R
VEVPAGQNSTTVQGLTPCTTYLVTVTAAFRSGRQRALSAKACTASGARTRAPQSMRPEAGPREP




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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