NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79201.1 Public Mus musculus 13 Gm3604 23 108 98 CCDS HistoryNCBI Gene:100041979Re-query CCDS DB by CCDS ID:79201.1Re-query CCDS DB by GeneID:100041979See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187656.6 ENSMUSP00000139845.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187656.6Link to Ensembl Protein Viewer:ENSMUSP00000139845.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187656Re-query CCDS DB by Protein ID:ENSMUSP00000139845
Original member Current member NCBI NM_001162910.1 NP_001156382.1 Accepted alive Link to Nucleotide Sequence:NM_001162910.1Link to Protein Sequence:NP_001156382.1Re-query CCDS DB by Nucleotide ID:NM_001162910Re-query CCDS DB by Protein ID:NP_001156382Link to BLAST:NP_001156382.1

Chromosomal Locations for CCDS 79201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 62368863 62370351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62371563 62371623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62371810 62371936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62383080 62383082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGAATGCAGTGACTTATGAGGACGTGCATGTGAACTTCACTCAGGAGGAGTGGGCTCTGCTGGATCCTT
CC
CAGAAGACACTCTACAAAGATGTCATGCTGGAGACATTCAGGAACCTCAATGCTATAGGCTTTAATTG
G
GAAGCCCAAAATATTGAAGAATATTGTCAAAGTTCTAGAAGACACAGAAGGTGTGAAAGGAGTCAGAGT
GCA
GAGAAACCCTCTGAATATACTCAACGTGATAAAGCCTTCGCTTTACATGATCACAGTCATGCCCAAA
GG
CATGAAAGGGTTCATACAGAAAAGATCCCCTCTGAAGTTATTCACTGTGTCGAAGACTTTTTACCTTA
C
ACTAGTCTCCAAGTACATAAAAGAACACAAACTGGACAGAAGCCCTATGAATGTAATCAATGTGGTAAA
GGA
TTTGTAATGCCCAGTTGTCTTAAAAGGCATGAAAGATTTCATACTGGAGAGAAACCCTACAAATGTA
AT
CAATGTGATAAAGCTTTTTCCCAATACAATAATCTTCAAACTCATAGAAGAACACATACAGGAGAGAA
A
CCCTACAAATGTAATCAATGTGATAAAGCCTTTTCACAACACAGTACTCTTCAAACTCACAGAAGAACA
CAT
ACAGGAGAGAAACCCTTTAAATGTAATCAATGTGATAAAGCCTTTTCTGAGAAATGTAGTCTCCAAA
CT
CATAGAAGAACACATACCGGAGAGAAACCTTACAAATGTAATCAATGTGATAAAGCCTTTTCCCAATA
C
AGTCATCTCCACATTCATAGAAGAACACATACTGGAGAGAAACCATTAAAATGTAATGAATGTGATGAA
ACA
TTTTCAAACCATAGTAATCTTCAAACTCATAGAAGAATACATACAGGAGAGAAACCCTACAAATGTA
AT
CAATGTGATAAAGCCTTTTCACAACACAGTACTCTTCAAAATCATAGAAGAACACATACTGGAGAGAA
A
CCCTTCAAATGTAATCAATGTGATAAAGCTTTTTCAAGACACAGTACTCTTCAAACTCATAGAAGAACA
CAT
ACTGGAGAGAAACCATTCAAATGTAATCAATGTGATAAAGCCTTTTCCCAATACAGTCATCTCCACA
TT
CATAGAAGAACACATACTGGAGAGAAACCATTCAAATGTAATCAATGTAATAAAGCCTTTTCCCAATA
C
AGTCATCTCCACATTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATGTAATCAATGTGATAAA
ACA
TTTTCAAACCACAGTACTCTTCAAACTCATAGAAGAACACATACTGGAGAGAAACCCTACAAATGTA
AT
CAATGTGATAAAGCTTTTTCAAGACACAGTACTCTTCAAACTCATAGAAGAACACATACTGGAGAGAA
A
CCCTTTAAATGTAATCAATGTGATAAAGCCTTTTCTCAGAAATGTAGTCTCCAAAAACATATAAGGATA
CAT
ACTGGAGAAAAACTCTACAAATGTAATGAATGTGATAAAGCCTTTTCACAACACAGTACTCTTCAAA
CT
CATAGAAGAACACATACCGGAGAGAAACCCTTCAAATTTAATGAATGTGATGAAGGCTTTTCTCACCA
T
TATAATCTACAAATTCATGAGAGAAGACATACTAGAGAGAAACCTTACAAGTGTATTCAGTGTGTGTAA


Translation (559 aa):
MNAVTYEDVHVNFTQEEWALLDPSQKTLYKDVMLETFRNLNAIGFNWEAQNIEEYCQSSRRHRRCERSQS
A
EKPSEYTQRDKAFALHDHSHAQRHERVHTEKIPSEVIHCVEDFLPYTSLQVHKRTQTGQKPYECNQCGK
G
FVMPSCLKRHERFHTGEKPYKCNQCDKAFSQYNNLQTHRRTHTGEKPYKCNQCDKAFSQHSTLQTHRRT
H
TGEKPFKCNQCDKAFSEKCSLQTHRRTHTGEKPYKCNQCDKAFSQYSHLHIHRRTHTGEKPLKCNECDE
T
FSNHSNLQTHRRIHTGEKPYKCNQCDKAFSQHSTLQNHRRTHTGEKPFKCNQCDKAFSRHSTLQTHRRT
H
TGEKPFKCNQCDKAFSQYSHLHIHRRTHTGEKPFKCNQCNKAFSQYSHLHIHRRTHTGEKPYKCNQCDK
T
FSNHSTLQTHRRTHTGEKPYKCNQCDKAFSRHSTLQTHRRTHTGEKPFKCNQCDKAFSQKCSLQKHIRI
H
TGEKLYKCNECDKAFSQHSTLQTHRRTHTGEKPFKFNECDEGFSHHYNLQIHERRHTREKPYKCIQCV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser