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Report for CCDS15566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15566.1 Public Mus musculus 1 Coq8a 23 108 98 CCDS HistoryNCBI Gene:67426Re-query CCDS DB by CCDS ID:15566.1Re-query CCDS DB by GeneID:67426See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027766.12 ENSMUSP00000027766.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027766.12Link to Ensembl Protein Viewer:ENSMUSP00000027766.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027766Re-query CCDS DB by Protein ID:ENSMUSP00000027766
Original member Current member EBI ENSMUST00000170472.7 ENSMUSP00000128290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170472.7Link to Ensembl Protein Viewer:ENSMUSP00000128290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170472Re-query CCDS DB by Protein ID:ENSMUSP00000128290
Original member Current member NCBI NM_001163290.1 NP_001156762.1 Accepted alive Link to Nucleotide Sequence:NM_001163290.1Link to Protein Sequence:NP_001156762.1Re-query CCDS DB by Nucleotide ID:NM_001163290Re-query CCDS DB by Protein ID:NP_001156762Link to BLAST:NP_001156762.1
Original member Current member NCBI NM_023341.3 NP_075830.2 Accepted alive Link to Nucleotide Sequence:NM_023341.3Link to Protein Sequence:NP_075830.2Re-query CCDS DB by Nucleotide ID:NM_023341Re-query CCDS DB by Protein ID:NP_075830Link to BLAST:NP_075830.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156762.1 645 Q60936-1 645 100% 0 0
NP_075830.2 645 Q60936-1 645 100% 0 0

Chromosomal Locations for CCDS 15566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180167169 180167456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180168322 180168408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180168571 180168636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180168773 180168880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180169080 180169221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180169416 180169509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180169633 180169714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180170062 180170202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180170343 180170428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180171564 180171686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180174251 180174325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180178577 180178643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180178883 180179284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180182062 180182238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGCTGCTATGTTGGGGGATGCCATCATGGTGGCCAAAGGCCTTGCCAAGCTGACCCAAGCAGCGGTGG
AAACCCACTTGCAGAACCTGGGCCTTGGTGGGGAGCTCCTCCTGGCGGCCAGGGCCCTGCAGTCTACAGC
TGTGGAGCAGTTCAGCATGGTCTTCGGGAAGGTGCAGGGTCAGGATAAGCATGAAGATTCATATGCCACT
GAGAACTTTGAAGATCTGGAAGCCGAAGTTCAGTTCTCAACACCACAGGCAGCTGGAACCTCCCTGGACT
TCTCTGCGGCCTCTTCCCTGGACCAGTCACTGTCTCCATCCCACAGTCAGGGACCGGCCCCTGCCTATGC
TTCCAGTGGGCCTTTCAGGGAAGCTGGGCTCCCTGGACAGGCCACCTCTCCTATGGGCAGAGTCAATGGA
AGGCTCTTTGTAGATCACAGAGACTTGTTCTTGGCCAACGGCATCCAGCGAAGATCCTTCCACCAGGACC
AGTCCTCCGTGGGAGGCCTCACGGCTGAAGACATTGAAAAGGCCCGGCAGGCCAAGGCTCGCCCTGAGAG
CAAGCCACACAAGCAGATGCTCAGTGAGCGGGCTCGGGAGCGGAAGGTGCCAGTTACCCGGATTGGGCGG
TTGGCCAACTTTGGAGGTCTGGCTGTAGGTCTGGGAATTGGGGCGTTGGCTGAAGTTGCCAAGAAGAGTC
TGCGTTCTGAGAACTCCACAGGAAAAAAAGCCGTGCTGGATTCTAGCCCCTTCCTGTCAGAGGCAAATGC
AGAGCGCATTGTGAGTACACTGTGCAAGGTGCGTGGGGCCGCACTGAAGCTGGGCCAGATGCTGAGCATC
CAGGATGATGCCTTCATCAACCCTCACCTGGCCAAGATCTTTGAGCGGGTGAGGCAGAGTGCTGACTTCA
TGCCACTGAAACAGATGACGAAAACCCTCAACAGCGACCTGGGCCCCCACTGGAGGGACAAGCTGGAGTA
CTTTGAAGAGCGGCCCTTTGCAGCGGCCTCCATAGGGCAGGTGCACCTGGCCCGCATGAAGGGTGGCCGT
GAGGTGGCCATGAAGATCCAGTACCCTGGTGTGGCCCAGAGCATTAACAGTGACGTCAACAACCTCATGG
CTGTGCTGAACATGAGTAACATGCTTCCAGAAGGCCTGTTCCCTGAGCACCTGATTGATGTGCTGAGACG
GGAGCTTACCCTTGAGTGTGACTACCAGCGGGAGGCTGCCTATGCCAAGAAGTTCAGGGAACTGCTGAAG
GACCATCCCTTCTTCTATGTGCCTGAGATTGTGGATGAGTTGTGCAGTCCCCATGTGCTGACCACAGAGC
TCATATCAGGCTTCCCCTTGGACCAGGCAGAAGGGCTGAGCCAGGAAGTGAGGAATGAGATCTGCTACAA
CATTTTGGTGCTGTGCCTGAGAGAGCTGTTTGAGTTCCATGTCATGCAGACTGACCCCAACTGGTCCAAT
TTCTTTTATGACCCTCAGCAGCACAAGGTGGCTCTCCTGGACTTCGGCGCAACTAGAGAATATGACAGAT
CCTTTACTGACCTCTACATTCAGGTCATCCGGGCCGCTGCTGACCAGGACAGGGAGGCAGTGCTAAAGAA
ATCCATAGAGATGAAGTTCCTTACCGGTTATGAGGTCAAGGCCATGGAGGATGCTCACCTGGATGCTATT
CTCATCCTGGGGGAGGCCTTTGCCTCCGAAGAGCCCTTCGACTTCGGTACCCAGAGCACTACTGAGAAGA
TCCACAACCTGATTCCCGTCATGCTGAAGCACCGCCTCATCCCACCCCCAGAGGAGACCTACTCTCTGCA
CCGCAAGATGGGTGGCTCTTTCCTCATCTGCTCTAAGCTGAAGGCCCGCTTCCCCTGTAAGGCCATGTTC
GAGGAAGCGTACAGTAACTACTGCAGGATGAAGTCTGGGCTGCAGTAG

Translation (645 aa):
MAAMLGDAIMVAKGLAKLTQAAVETHLQNLGLGGELLLAARALQSTAVEQFSMVFGKVQGQDKHEDSYAT
ENFEDLEAEVQFSTPQAAGTSLDFSAASSLDQSLSPSHSQGPAPAYASSGPFREAGLPGQATSPMGRVNG
RLFVDHRDLFLANGIQRRSFHQDQSSVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGR
LANFGGLAVGLGIGALAEVAKKSLRSENSTGKKAVLDSSPFLSEANAERIVSTLCKVRGAALKLGQMLSI
QDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNSDLGPHWRDKLEYFEERPFAAASIGQVHLARMKGGR
EVAMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFPEHLIDVLRRELTLECDYQREAAYAKKFRELLK
DHPFFYVPEIVDELCSPHVLTTELISGFPLDQAEGLSQEVRNEICYNILVLCLRELFEFHVMQTDPNWSN
FFYDPQQHKVALLDFGATREYDRSFTDLYIQVIRAAADQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAI
LILGEAFASEEPFDFGTQSTTEKIHNLIPVMLKHRLIPPPEETYSLHRKMGGSFLICSKLKARFPCKAMF
EEAYSNYCRMKSGLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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