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Report for CCDS38638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38638.1 Public Mus musculus 3 Etnppl 23 108 98 CCDS HistoryNCBI Gene:71760Re-query CCDS DB by CCDS ID:38638.1Re-query CCDS DB by GeneID:71760See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072271.12 ENSMUSP00000072121.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072271.12Link to Ensembl Protein Viewer:ENSMUSP00000072121.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072271Re-query CCDS DB by Protein ID:ENSMUSP00000072121
Original member Current member EBI ENSMUST00000166187.7 ENSMUSP00000131294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166187.7Link to Ensembl Protein Viewer:ENSMUSP00000131294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166187Re-query CCDS DB by Protein ID:ENSMUSP00000131294
Original member Current member NCBI NM_001163587.1 NP_001157059.1 Accepted alive Link to Nucleotide Sequence:NM_001163587.1Link to Protein Sequence:NP_001157059.1Re-query CCDS DB by Nucleotide ID:NM_001163587Re-query CCDS DB by Protein ID:NP_001157059Link to BLAST:NP_001157059.1
Original member Current member NCBI NM_027907.3 NP_082183.2 Accepted alive Link to Nucleotide Sequence:NM_027907.3Link to Protein Sequence:NP_082183.2Re-query CCDS DB by Nucleotide ID:NM_027907Re-query CCDS DB by Protein ID:NP_082183Link to BLAST:NP_082183.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157059.1 499 Q8BWU8 499 100% 0 0
NP_082183.2 499 Q8BWU8 499 100% 0 0

Chromosomal Locations for CCDS 38638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 130617693 130617748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130620310 130620428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130620633 130620792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130622301 130622375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130625468 130625558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130626438 130626554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130628744 130628826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130629355 130629580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130630508 130630662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130631329 130631418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130631720 130631850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130633408 130633475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130634549 130634677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGTGCGAGCTCTATAGCAAGCAGGACACCCTGGCGCTGAGGGAGAGGCACATCGGGCCCTCGTGCAAAA
TTTTCTTTGCCGCGGATCCCATCAAAATAATGCGAGCCCAGGGGCAGTACATGTTTGATGAGAAAGGCGA
ACGGTACTTAGACTGCATCAACAACGTGGCGCATGTGGGACACTGTCACCCAGAAGTGGTCAAAGCTGCC
GCGAAACAGATGGAATTACTAAATACAAATTCTCGCTTCCTCCACGACAACATCATTGAGTTTGCCAAGC
GCCTTACTGCCACCCTGCCTCAGGAGCTCTCCGTTTGCTACTTCACAAACTCCGGATCCGAAGCCAATGA
CTTAGCCTTACGTCTGGCACGGCAGTTCCGAGGCCACCAGGATGTGATCACCCTTGACCATGCTTACCAC
GGCCACCTGTCGTCATTAATTGAGATCAGTCCTTATAAGTTTCAGAAGGGCAAAGATGTCAAGAGGGAAA
CTGTACATGTGGCACCAGCTCCAGACACTTACAGAGGGAAATACAGAGAGGACCACGAAGACCCATCCAC
TGCATATGCCGACGAGGTGAAGAAGATCATTGAAGAGGCTCACAGCAGCGGAAGGAAGATTGCTGCCTTT
ATTGCTGAATCCATGCAGAGTTGTGGTGGACAAATTATTCCTCCAGCAGGCTACTTCCAGAAAGTGGCTG
AACACATTCACAAAGCAGGAGGTGTGTTCATTGCTGACGAAGTTCAAGTAGGCTTTGGCAGAGTTGGGAG
GTACTTCTGGAGCTTCCAGATGTATGGTGAAGACTTCGTTCCAGACATCGTCACCATGGGGAAACCTATG
GGCAACGGTCACCCGATATCCTGTGTGGTGACAACCAAAGAAATTGCAGAAGCCTTCAGCAGCTCGGGCA
TGGAATATTTCAATACGTATGGAGGAAATCCAGTGTCTTGTGCAGTTGGCTTGGCTGTGCTGGATGTAAT
TGAAAAGGAGAACCTTCAAGGGAATGCTGTCAGAGTGGGGACCTATCTCATGGAGCTGCTGAGTGAACAG
AAGGCTAAGCATCCCTTGATAGGGGACATCAGAGGTGTCGGCCTTTTTATCGGCATCGATTTGGTGAAGG
ACCGTGAGAAAAGAACACCTGCGACAGCTGAAGCACAGCACATCATCTACGAGATGAAAGGAAAGGGGGT
ACTTCTCAGTGCCGATGGCCCTCACAGGAACGTGCTGAAAATAAAACCACCCATGTGCTTCACGGAAGAC
GATGCAAAGTTCCTGGTGGACCACCTTGACGGCATTTTAACAGTTTTAGAAGAAGCCATGGACTCCAAGA
GTGGAACTGTGTTCTCTGAGAACACAGCTTACAGAACAAAGATGCCTAAGGAAATACAAGTGGAATTGCC
CAACCTTAGTGCCACCGAGGCCAGAGAAATCCCCAGGGGAAAGAGAAATGGTGTATGCTCAGACCAGCAA
GCCCTGCTCAGCAAAAGACTCAAGACATGA

Translation (499 aa):
MCELYSKQDTLALRERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVAHVGHCHPEVVKAA
AKQMELLNTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYH
GHLSSLIEISPYKFQKGKDVKRETVHVAPAPDTYRGKYREDHEDPSTAYADEVKKIIEEAHSSGRKIAAF
IAESMQSCGGQIIPPAGYFQKVAEHIHKAGGVFIADEVQVGFGRVGRYFWSFQMYGEDFVPDIVTMGKPM
GNGHPISCVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDVIEKENLQGNAVRVGTYLMELLSEQ
KAKHPLIGDIRGVGLFIGIDLVKDREKRTPATAEAQHIIYEMKGKGVLLSADGPHRNVLKIKPPMCFTED
DAKFLVDHLDGILTVLEEAMDSKSGTVFSENTAYRTKMPKEIQVELPNLSATEAREIPRGKRNGVCSDQQ
ALLSKRLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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