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Report for CCDS22317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22317.1 Public Mus musculus 8 Galnt7 23 108 98 CCDS HistoryNCBI Gene:108150Re-query CCDS DB by CCDS ID:22317.1Re-query CCDS DB by GeneID:108150See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034021.11 ENSMUSP00000034021.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034021.11Link to Ensembl Protein Viewer:ENSMUSP00000034021.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034021Re-query CCDS DB by Protein ID:ENSMUSP00000034021
Original member Current member NCBI NM_144731.4 NP_653332.3 Accepted alive Link to Nucleotide Sequence:NM_144731.4Link to Protein Sequence:NP_653332.3Re-query CCDS DB by Nucleotide ID:NM_144731Re-query CCDS DB by Protein ID:NP_653332Link to BLAST:NP_653332.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653332.3 657 Q80VA0-1 657 100% 0 0

Chromosomal Locations for CCDS 22317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57526114 57526251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57531602 57531730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57532628 57532726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57536583 57536801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57538086 57538208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57540020 57540137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57542512 57542694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57545329 57545408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57545669 57545799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57552444 57552610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57583767 57584227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57652853 57652978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGAGGCTGAAGATCGGGTTCATCTTACGCAGTTTGCTGGTGGTGGGAAGCTTCCTGGGGCTCGTGGTCC
TCTGGTCTTCCCTGTCCTCGCGGCCCGACGACCAGAGCCCACTGAGCAGGATGAGGGAAGACAGAGATGT
CAATAACCCCTTGCCTAACCGAGGAGGCAATGGACTAGCTCCTGGAGATGACAGATTCAAACCTGTGGTA
CCATGGCCTCATGTTGAAGGAGTAGAAGTGGACTTAGAGTCTATTAGAAGAAAAAACAAAGCCAAAAATG
AACAGGAGCGCCATGCTGGAGGAGATTCCCAGAGAGACGTAATGCAGAGGCAGTACCTTACATTTAAGCC
TCAGACCTTCACCTACCGTGATCCTGTGCTACGCCCAGGGGTCCTCGGGAACTTTGAACCCAAAGAACCC
GAGCCTCACGGAGTGGTTGGTGGCCCTGGAGAGAAAGCCAAGCCATTGGTTCTGGGACCAGAATACAAAC
AAGCAGTTCAAGCCAGCATTAAGGAGTTTGGATTTAACATGGTGGCAAGTGACATGATCTCACTGGACCG
CAGCGTCAATGACTTACGCCAAGAAGAATGCAAGTATTGGCACTATGATGAAAACCTGCTTACTTCAAGC
GTTGTCATTGTCTTCCATAATGAAGGATGGTCAACCCTCATGAGGACAGTCCACAGTGTAATCAAAAGGA
CACCAAGGAAGTACTTAGCAGAAATCGTGTTAATTGATGACTTCAGCAATAAAGAACACTTAAAAGAGAA
ACTGGATGAGTATATAAAGCTATGGAATGGCCTCGTGAAGGTATTTCGAAATGAGAGAAGAGAGGGTTTG
ATTCAAGCTCGGAGCATTGGCGCACAGAAGGCTAAACTCGGACAGGTTTTGATATACCTTGATGCCCACT
GTGAGGTGGCAGTTAACTGGTATGCTCCACTTGTAGCCCCCATATCTAAGGACAGAACCATTTGCACTGT
GCCGATTATAGATGTCATAAGCGGCAACACATATGAAATTATACCCCAAGGGGGTGGTGATGAAGATGGG
TATGCCCGAGGAGCATGGGACTGGAGTATGCTCTGGAAACGGGTGCCTCTGACCTCTCGAGAGAAGAGAC
TGAGAAAGACAAAAACTGAGCCGTATCGGTCTCCAGCTATGGCGGGTGGATTGTTTGCCATAGAGAAGGA
CTTCTTCTTCGAACTGGGTCTCTATGATCCTGGTCTCCAGATCTGGGGTGGTGAAAACTTTGAAATTTCA
TACAAGATCTGGCAGTGCGGTGGCAAATTGTTATTTGTGCCTTGTTCTCGTGTTGGGCACATCTACCGTC
TTGAGGGCTGGCAAGGAAACCCCCCACCCCTTTACGTTGGCTCCTCTCCAACTCTGAAGAATTATGTTAG
AGTCGTGGAAGTCTGGTGGGATGAATATAAAGACTACTTCTATGCTAGCCGTCCTGAGTCAAAGGCGCTG
CCCTACGGGGACATATCTGAGCTGAAGAAATTTCGAGAAGATCACAACTGCAAAAGTTTCAAGTGGTTTA
TGGAAGAAATCGCTTATGACATCACTGCCCACTACCCTTTGCCCCCCAGAAATGTCGAGTGGGGTGAAAT
CCGAGGCCTCGAAACTGCATACTGTATTGATAGCATGGGGAAGACGAATGGAGGCTTCGTGGAGCTAGGA
CCCTGCCACAGGATGGGTGGGAACCAGCTTTTCCGAATCAATGAAGCAAACCAGCTCATGCAGTACGACC
AGTGTTTGACAAAGGGGCCTGATGGATCCAAAGTCATGATCACACACTGTAACCTAAATGAATTTAAGGA
ATGGCAGTACTTCAAGAGCCTGCACAGGTTTACGCACATCACTTCCGGAAAGTGCTTAGATCGATCGGAG
GTCCTGCATCAAGTGTTCATCTCCACCTGTGACTCCAGTAAAATGACTCAGAAGTGGGAGATGAATAACA
TCCACAGTGTTTGA

Translation (657 aa):
MRLKIGFILRSLLVVGSFLGLVVLWSSLSSRPDDQSPLSRMREDRDVNNPLPNRGGNGLAPGDDRFKPVV
PWPHVEGVEVDLESIRRKNKAKNEQERHAGGDSQRDVMQRQYLTFKPQTFTYRDPVLRPGVLGNFEPKEP
EPHGVVGGPGEKAKPLVLGPEYKQAVQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTSS
VVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERREGL
IQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVISGNTYEIIPQGGGDEDG
YARGAWDWSMLWKRVPLTSREKRLRKTKTEPYRSPAMAGGLFAIEKDFFFELGLYDPGLQIWGGENFEIS
YKIWQCGGKLLFVPCSRVGHIYRLEGWQGNPPPLYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESKAL
PYGDISELKKFREDHNCKSFKWFMEEIAYDITAHYPLPPRNVEWGEIRGLETAYCIDSMGKTNGGFVELG
PCHRMGGNQLFRINEANQLMQYDQCLTKGPDGSKVMITHCNLNEFKEWQYFKSLHRFTHITSGKCLDRSE
VLHQVFISTCDSSKMTQKWEMNNIHSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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