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Report for CCDS27420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27420.1 Public Mus musculus 15 Pop1 23 108 98 CCDS HistoryNCBI Gene:67724Re-query CCDS DB by CCDS ID:27420.1Re-query CCDS DB by GeneID:67724See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052290.13 ENSMUSP00000052654.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052290.13Link to Ensembl Protein Viewer:ENSMUSP00000052654.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052290Re-query CCDS DB by Protein ID:ENSMUSP00000052654
Original member Current member NCBI NM_152894.2 NP_690854.1 Accepted alive Link to Nucleotide Sequence:NM_152894.2Link to Protein Sequence:NP_690854.1Re-query CCDS DB by Nucleotide ID:NM_152894Re-query CCDS DB by Protein ID:NP_690854Link to BLAST:NP_690854.1

Chromosomal Locations for CCDS 27420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34499291 34499432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34502311 34502478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34504959 34505134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34506419 34506667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34508120 34508207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34508604 34508791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34509763 34510019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34510332 34510425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34511914 34512025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34512732 34512851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34513090 34513179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34515842 34515957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34517827 34518018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34526163 34526317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34528883 34529230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34529863 34530505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3138 nt):
ATGTCTAATGCAAAGGAAAGAAAACATGCTAAGAAAATGAGAAACCAGCCCAGTAACGTGACTCTGTCCT
CCGGCTTTATGGCTGAGAGAGATGGAAAGCATCATTTTGGAAAGGGGAAGCCGTCCCAATCTCAGAAACA
AGAGCTTCATTCTGGAACCTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACTTGCTTCCTGAGTCTGAT
GTGAATGAGCAATCTTCCTCCAAAACCATGTTTAAGAAAAAGGGAGGCTGGAAAGCAGGTCCTGAGGGCA
CTTCTCAGGAGATCCCCAAGTATATAACTGCTTCTACTTTTGCTCAAGCACGAGCCGCTGAAATCAGTGC
CATGTTAAAAGCTGTGACCCAGAAGTCATCTAACTCACTGGTTTTCCAGACTCTTCCAAGGCACATGCGA
CGTAGAGCCATGAGCCACAATGTCAAACGCCTTCCTAGACGGTTGCAGGAGATGGCCAAAAAAGAGGCGG
AGAAAGCTGCTCATCAGAAAAAAGAACATTCAAAAAATAAATGCCACAAAGCCCGAAGATGTCACATAAA
CCGGACTCTGGAATTTAACCGCAGACAACAGAAGAACATATGGTTAGAGACTCACATCTGGCACGCCAAA
CGGTTTCATATGGTGAAGAAGTGGGGTTACTGCCTTGGGGAGAGGCCCACGGCCAAGAGCCACCGAGCCT
GCTATCGAGCCATGACAAACCTCTGCCTCCTGCAGGATTTATCATATTACTGCTGTTTGGAGTTGAAAGG
CAAAGAGGAAGAACTACTGAAAGCGCTCTCTCAAATGTGTAGCATAGACGCAGGCCTGACTTTTGCTGCA
GTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGGGAAA
TGCTTGGGCCGGTTACCTTCATCTGGAAGTCTAGGATGACCCCAGAGGATGCTTCTGAGGATAGGCAGCT
GTGGATCTGGCTTCACCCAACTCTTAAACTGGCTGTCCTAGAAGAAATAAAAACAACATGCCACTGTTCA
GAACCCGTCAAGTCAAATATCTGCATGCCTGACCCACTCCTGACACCAGCCCCGGAAGACATTCAAGCAG
GACTAGCTGGTGACAAAATCAGCAAGAAAAGAAAAAGGAGAGACGATGGGGAGAGTGTTAGCCGAGCTAA
GAAGACCATTGGTGACGGGACACGAGATGCCTGCCAGCCTCGGTCATGGCGATCTCCCACTACAGGGATT
ATAGTCAGTGACTTGACAATGGAGATGAACAGGTTCCGGCTGATAGGCCCTCTTTCGCACTGTATCCTGA
CCTCAGCACTGAGGGCTGCTCCTGTACACACAGGGGAAGAGGATGCCGAGGAGACACCACATCACTGGTG
GACTGACACTTGCAGGAGCTCTGATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTGTTTGAGTTGTTG
GGAGGGATATCATCACCAGCAGAAATTCCAGCAGGTACTATTCTGGGATTGACAGTTAGGGATCCGAGAG
TAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGGAATTTACCTG
TGAGGAAGGGATGTGCACCGGCAGCTGGTCTTGTGCTCATTGGAAGCCTCTGTCTGACCATACAGATGAT
CCAGCTAATGAGCGAGTGAAGCAGCTGCTTCTGGAGGGTGTGCCTGTGGCATGTGCACACAGCTTCATCT
GGGACCAGGATATCTGTAGGAGTGTCACCGAGAATAAACTCTTGGATCAGGATTTAAACCGGATGAGAAG
TGAGTTGCTGGTGCCCGGATCGCAACTTGATTTAGGGGCTCGTGAATCTAAGATACCCATACTTCTGATT
CAGCAGCCAGGAAAAGTGACTGGCGAAGACCGACTGGGCTGGGGCAGTGGCTGGGATGTCCTCATTCCCA
AGGGCTGGGGCATGGCTTTTTGGATTCCATTTATCTACCGAGGTGCACGAGTTGGTGGACTAAAAGAGGC
TACAGTGCATTCTCAATACAGACGGTCTCCTAACATCCCAGGCGATTTCCCAGACTGCCGTGCTGGAGTT
CTGTTTGCTGAAGATCAAGCTAAGGATCTTCTAGAGAAGTACAGACGACGCCCTCCTGCTAAAAGGCCCA
ACTATGTTAAGCTTGGCACACTGGCTCCTTTCTGTTGTCCCTGGGAACAGCTGACTCGGGACTGGGAGTC
CAGGGTTCATGCCCAAGAGGCAGCTATTATAGCTTCAATGCCTGGTGCTCAGGAGACTGACCCAAGACGG
CTTGGAGTGCCTTGTGTCCCCAAAGAGATCTGCCAACTATCTAATGAGGCAGGCATAGCTGAAAACCAAC
CCAGGAAGCCAGAAGTTACAGGCTGTCAAGCGCAGGAGGGGACCAAAGTGGCCATGGAATGGAATGCCAG
TGAGGCTCATATGGCTACCACAGGTAGCCAGCTCTGTGTTGTTCGGAGTAGGAAACTGCTGAAGCAGCTC
TCGTCCTGGTGTGGGCCCAGTTCTGAGATCAGGAGGGCTCCCTGCAGAGCTCAGCAAGAACTGACTAGTA
ACGTCTGCTTGTCCATTCTGAATGACTTCCCCAGAGCCCTGGTGTGGGTCAGCTTGTCCCTGCTCAGGAA
GGGCAGCCCAGAGCCTCACACCATGATCTGTGTCCCATCTAAGGAGGACCTGCACCGGCTCAGTCAGGAT
CAGTGCTACCATGGACCCTGGGAATCCAGACACAGCGACCCATTTAAAAGCCTGATTCTGAAGGAGAAAG
AAAAGAAGAAAAAGGAGAAGAGGCAGGATGGGGAACACAGAGCCTCCGAGGGCCAGGCCGCAGGGCCGCC
CATAGCTGGGCAGGAAGCTCTGACGCAGGGGCTGTGGTCAGGCCCCCTTCCAGGACTAACCTCACACTGC
TCCAGGCTCCTCCTAGGCTTTGTCACACAGGGAGATTTTTCTATGGCTGCTGGCTGTGGAGAAGCCTTAG
GGTTTGTTAGTATGACCGGCTTGCTGGAAATGTTGTCCAGCCAGTCAGCAGCCATGAGGGGCCTGGTGCT
GCTGCGGCCTCCAACCTCACTGCAGTATCGGTTTGCAAGAATTACCATTGAGGTGTGA

Translation (1045 aa):
MSNAKERKHAKKMRNQPSNVTLSSGFMAERDGKHHFGKGKPSQSQKQELHSGTSRQWQIKMSPHLLPESD
VNEQSSSKTMFKKKGGWKAGPEGTSQEIPKYITASTFAQARAAEISAMLKAVTQKSSNSLVFQTLPRHMR
RRAMSHNVKRLPRRLQEMAKKEAEKAAHQKKEHSKNKCHKARRCHINRTLEFNRRQQKNIWLETHIWHAK
RFHMVKKWGYCLGERPTAKSHRACYRAMTNLCLLQDLSYYCCLELKGKEEELLKALSQMCSIDAGLTFAA
VHCLSGKRQGSLMLYRANKYPREMLGPVTFIWKSRMTPEDASEDRQLWIWLHPTLKLAVLEEIKTTCHCS
EPVKSNICMPDPLLTPAPEDIQAGLAGDKISKKRKRRDDGESVSRAKKTIGDGTRDACQPRSWRSPTTGI
IVSDLTMEMNRFRLIGPLSHCILTSALRAAPVHTGEEDAEETPHHWWTDTCRSSDGRSLHQRQEAVFELL
GGISSPAEIPAGTILGLTVRDPRVNLPPQRSRALPDPERYQVSEFTCEEGMCTGSWSCAHWKPLSDHTDD
PANERVKQLLLEGVPVACAHSFIWDQDICRSVTENKLLDQDLNRMRSELLVPGSQLDLGARESKIPILLI
QQPGKVTGEDRLGWGSGWDVLIPKGWGMAFWIPFIYRGARVGGLKEATVHSQYRRSPNIPGDFPDCRAGV
LFAEDQAKDLLEKYRRRPPAKRPNYVKLGTLAPFCCPWEQLTRDWESRVHAQEAAIIASMPGAQETDPRR
LGVPCVPKEICQLSNEAGIAENQPRKPEVTGCQAQEGTKVAMEWNASEAHMATTGSQLCVVRSRKLLKQL
SSWCGPSSEIRRAPCRAQQELTSNVCLSILNDFPRALVWVSLSLLRKGSPEPHTMICVPSKEDLHRLSQD
QCYHGPWESRHSDPFKSLILKEKEKKKKEKRQDGEHRASEGQAAGPPIAGQEALTQGLWSGPLPGLTSHC
SRLLLGFVTQGDFSMAAGCGEALGFVSMTGLLEMLSSQSAAMRGLVLLRPPTSLQYRFARITIEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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