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Report for CCDS38476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38476.1 Public Mus musculus 3 Sh2d2a 23 108 98 CCDS HistoryNCBI Gene:27371Re-query CCDS DB by CCDS ID:38476.1Re-query CCDS DB by GeneID:27371See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107581.8 ENSMUSP00000103207.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107581.8Link to Ensembl Protein Viewer:ENSMUSP00000103207.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107581Re-query CCDS DB by Protein ID:ENSMUSP00000103207
Original member NCBI NM_021309.3 NP_067284.1 Updated not alive Link to Nucleotide Sequence:NM_021309.3Link to Protein Sequence:NP_067284.1Re-query CCDS DB by Nucleotide ID:NM_021309Re-query CCDS DB by Protein ID:NP_067284
Current member NCBI NM_021309.4 NP_067284.1 Accepted alive Link to Nucleotide Sequence:NM_021309.4Link to Protein Sequence:NP_067284.1Re-query CCDS DB by Nucleotide ID:NM_021309Re-query CCDS DB by Protein ID:NP_067284Link to BLAST:NP_067284.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067284.1 374 Q9QXK9-1 374 100% 0 0

Chromosomal Locations for CCDS 38476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87847074 87847107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87847637 87847791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87848358 87848539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87849063 87849152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87849311 87849479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87851723 87851875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87852067 87852408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGAGTTCTGCTTGGCCCAACCATGCCCCCAAGGGAATCATGAAGCTACTTCATCAACCTTCAACACCT
TCCAGCCAATGAACCTGACCCAGGGGAGATGCCAGAACTTGAGTTGTGGGAGCAGGCCCAGCATGCAAGT
TATGAAGGAACAGGGGGTTCAGCTCAGCCCCAGAACTAACCACACGGTGGTCTCTGCCTCAGCCCCAGGA
ACTGCCTGGGTCCTAGGGAATGCCGATAGGGCAGAAGAGGTGCCTGGGAAAGGTGACCTGTCATTGCAAG
CTGAGACCAGAGCATGGGTCCAGAAGACCCAGGCCCACTGGCTCTTGCTCAAGACTGCCCCTCTTTGGTT
CCATGGCTTCATCACCAGAAGGGAAGCCGAGAGGCTGCTGCAGCCCCAGCCTCTAGGATGCTATCTGGTG
CGCTTCAGCGAGAGTGCTGTGACCTTCGTGCTGTCCTACAGGAGCCAGACCTGCTGCCGTCACTTCCTCC
TCGCGCAGCTAGGGGATGGGCGCCACGTGGTGCTAGGTGAAGACAGTGCCCATGCGCAGCTTCAGGACCT
GCTTGAACATTACACAGAGTGCCCCCTCAGCCCCTACGGAGAGATACTCACCCAACCCCTCGCTCGACAG
ACAGCTGAGCCTGCTGGACTTTCCCTAAGGGCTGATTCAGACTCTGGAAGCAAAAGACAGGACCCAGACA
CCCAGCTCAGCCTGCTCCTCCAACAGGGCCAGGCCCAGGCCTCAGGACACACAGAGAAAGTATGGGCCTC
CCAACAGAAGGCGACATCCCAGGCATCCAGACCCAGGCCGCCCATCCCCGCCAAGCCTCAGCTTCCTCCT
GAAGTCTATACAAGTCCTGCTTCACGACTGCATCAGGCCCCACCCATTAACCCCATCTACCAGGAGCCTG
ATGAACCCATAGCCTTCTATGCCATGGGGCGGGGCAGCCCTGGGGACGCTCCTAGTAATATCTATGCTGA
GGTGGAAGGGCCATCGGGAACGGCGCCCATTGGACACCCCATCCTCCGAAAGTGCTGGTCCAGGCCTATC
TCAAGAGGCCAGGTAAGGGAGGTACAGGGAAAGATAAGCTCAAGGAGTCGAGCAGAAAGAGGGAGCCCCT
CCTGA

Translation (374 aa):
MEFCLAQPCPQGNHEATSSTFNTFQPMNLTQGRCQNLSCGSRPSMQVMKEQGVQLSPRTNHTVVSASAPG
TAWVLGNADRAEEVPGKGDLSLQAETRAWVQKTQAHWLLLKTAPLWFHGFITRREAERLLQPQPLGCYLV
RFSESAVTFVLSYRSQTCCRHFLLAQLGDGRHVVLGEDSAHAQLQDLLEHYTECPLSPYGEILTQPLARQ
TAEPAGLSLRADSDSGSKRQDPDTQLSLLLQQGQAQASGHTEKVWASQQKATSQASRPRPPIPAKPQLPP
EVYTSPASRLHQAPPINPIYQEPDEPIAFYAMGRGSPGDAPSNIYAEVEGPSGTAPIGHPILRKCWSRPI
SRGQVREVQGKISSRSRAERGSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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