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Report for CCDS25222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25222.1 Public Mus musculus 11 Or4d2 23 108 98 CCDS HistoryNCBI Gene:258408Re-query CCDS DB by CCDS ID:25222.1Re-query CCDS DB by GeneID:258408See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081417.1 ENSMUSP00000080146.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081417.1Link to Ensembl Protein Viewer:ENSMUSP00000080146.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081417Re-query CCDS DB by Protein ID:ENSMUSP00000080146
Original member Current member EBI ENSMUST00000217095.1 ENSMUSP00000149255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217095.1Link to Ensembl Protein Viewer:ENSMUSP00000149255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217095Re-query CCDS DB by Protein ID:ENSMUSP00000149255
Original member Current member EBI ENSMUST00000215150.1 ENSMUSP00000149765.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215150.1Link to Ensembl Protein Viewer:ENSMUSP00000149765.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215150Re-query CCDS DB by Protein ID:ENSMUSP00000149765
Original member Current member NCBI NM_146413.2 NP_666525.2 Accepted alive Link to Nucleotide Sequence:NM_146413.2Link to Protein Sequence:NP_666525.2Re-query CCDS DB by Nucleotide ID:NM_146413Re-query CCDS DB by Protein ID:NP_666525Link to BLAST:NP_666525.2

Chromosomal Locations for CCDS 25222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87892987 87893922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAACCAGGGAACCTCACATGGGTGTCAGAGTTTGTCTTCCTGGGGTTCTCAGAGATCTGGGAGCTTC
AGGTCTTCCTGTTTGTGGTGTTCTTGTGTGTCTACAGCACGACCGTGGTGGGAAACCTCCTCATCATAGT
TACGGTTTCCTCAGACCCCAGGCTCCACACACCTATGTACTTCCTGCTCCGCAACCTGGCTGTCTTAGAC
CTCTGCTTCTCCTCAGTCACTGCCCCCAAGATGCTGGTGGACTTTCTCTCTGAGAAGAAGACTATCTCCT
ACCGAGGCTGCATGGTACAGATCTTCTTCTTCCACTTCCTGGGAGGGGCCATGGTCTTCTTCCTCTCAGT
AATGGCTTATGACCGCCTGGTGGCTATTTCCCGACCTCTCCACTATGTCACCATCATGAACAGCCAGCTT
TGTATGGGGCTGGTGGTGGCTTCCTGGGTAGGAGGCTTTGCCCACTCGATTGTCCAGCTGTCTCTGATGC
TCCCGTTGCCGTTCTGTGGACCCAATGTCCTGGATAACTTCTACTGTGATGTCCCCCAAGTACTGAGACT
TGCTTGCATGGACACCTCCCTCTTGGAGTTCCTCATGATCTCCAACAGTGGGATGCTGGATGTCATCTGG
TTCTTTCTCCTTCTCATCTCCTACTTGGTCATCCTGGTGATGCTGAGGTCTCACTCAGGGGAGGCGAGGA
GGAAGGCGGCGTCCACCTGCACCACCCACATCATCGTGGTGTCTATGATCTTCATTCCAAGCATTTACCT
GTATGCCCGGCCCTTCACCCCCTTCACCATGGACAAGGCTGTGTCCATCAGCCATACGGTCATGACCCCC
ATGCTCAACCCCATGATCTACACGCTCAGGAACCAGGAGATGCAGGCAGCCATGAAGAGACTAGCAAAGC
GCTTAGCGCTTTGCAACAGGGAGTGA

Translation (311 aa):
MEPGNLTWVSEFVFLGFSEIWELQVFLFVVFLCVYSTTVVGNLLIIVTVSSDPRLHTPMYFLLRNLAVLD
LCFSSVTAPKMLVDFLSEKKTISYRGCMVQIFFFHFLGGAMVFFLSVMAYDRLVAISRPLHYVTIMNSQL
CMGLVVASWVGGFAHSIVQLSLMLPLPFCGPNVLDNFYCDVPQVLRLACMDTSLLEFLMISNSGMLDVIW
FFLLLISYLVILVMLRSHSGEARRKAASTCTTHIIVVSMIFIPSIYLYARPFTPFTMDKAVSISHTVMTP
MLNPMIYTLRNQEMQAAMKRLAKRLALCNRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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