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Report for CCDS25221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25221.1 Public Mus musculus 11 Or4d2b 23 108 98 CCDS HistoryNCBI Gene:258406Re-query CCDS DB by CCDS ID:25221.1Re-query CCDS DB by GeneID:258406See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049743.1 ENSMUSP00000055334.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049743.1Link to Ensembl Protein Viewer:ENSMUSP00000055334.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000049743Re-query CCDS DB by Protein ID:ENSMUSP00000055334
Original member Current member EBI ENSMUST00000213672.1 ENSMUSP00000149954.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213672.1Link to Ensembl Protein Viewer:ENSMUSP00000149954.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213672Re-query CCDS DB by Protein ID:ENSMUSP00000149954
Original member Current member EBI ENSMUST00000213928.1 ENSMUSP00000150179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213928.1Link to Ensembl Protein Viewer:ENSMUSP00000150179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213928Re-query CCDS DB by Protein ID:ENSMUSP00000150179
Original member Current member NCBI NM_146411.2 NP_666523.2 Accepted alive Link to Nucleotide Sequence:NM_146411.2Link to Protein Sequence:NP_666523.2Re-query CCDS DB by Nucleotide ID:NM_146411Re-query CCDS DB by Protein ID:NP_666523Link to BLAST:NP_666523.2

Chromosomal Locations for CCDS 25221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87888959 87889894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAACCAGGGAACCGTACATGGGTGTCAGAGTTTGTCTTCCTGGGCTTCTCAGAGATCTGGGAGCTTC
AGGTCTTCCTGTTTGTGGTGTTCTTGTGTGTCTACAGCACGACCGTGGTGGGAAACCTCCTCATCATAGT
CACGGTCTCCTCAGACCCCAGGCTCCACACACCTATGTACTTCCTGCTCCGCAACCTGGCTGTCTTAGAC
CTCTGCTTCTCCTCAGTCACTGCCCCCAAGATGCTGGTGGACTTCCTCTCTGAGAAGAAGACCATCTCCT
ACCGAGGCTGCATGGCACAGGTCTTCTTCTTCCACTTCCTGGGAGGGGCCATGGTCTTCTTCCTGTCAGT
GATGGCCTATGACCGCCTGGTGGCTATCTCCCGGCCCCTGCACTATGTCACCATCATGAACACTCAACAC
TGTGTAGTACTGGTGGTAACTGCATGGATTGTGGGATTTGTCCACTCGATTGTCCAGCTGTCTCTGATGC
TCCCGTTGCCATTCTGTGGCCCCAATGTCCTGGATAACTTCTACTGTGATGTCCCCCAAGTGCTGAGACT
TGCCTGCACGGACACCTCCCTCTTGGAGTTCCTCATGATCTCCAACAGTGGGATGCTGGATGTCATCTGG
TTCTTTCTCCTTCTCATCTCCTACTTGGTCATCCTGGTGATGCTGAGGTCTCACTCAGGGGAGGCGAGGA
GGAAGGCGGCGTCCACCTGCACCACCCACATCATCGTGGTGTCTATGATCTTCATTCCAAGCATTTACCT
GTATGCCCGGCCCTTCACCCCCTTCACCATGGACAAGGCAGTATCCATCAGCCACACGGTCATGACCCCC
ATGCTCAACCCCATGATCTACACGCTCAGGAACCAGGAGATGCAGGCAGCACTGAAGAGACTAGGGATGC
ATCTGCTAGTTTGTAGAAAAGAGTGA

Translation (311 aa):
MEPGNRTWVSEFVFLGFSEIWELQVFLFVVFLCVYSTTVVGNLLIIVTVSSDPRLHTPMYFLLRNLAVLD
LCFSSVTAPKMLVDFLSEKKTISYRGCMAQVFFFHFLGGAMVFFLSVMAYDRLVAISRPLHYVTIMNTQH
CVVLVVTAWIVGFVHSIVQLSLMLPLPFCGPNVLDNFYCDVPQVLRLACTDTSLLEFLMISNSGMLDVIW
FFLLLISYLVILVMLRSHSGEARRKAASTCTTHIIVVSMIFIPSIYLYARPFTPFTMDKAVSISHTVMTP
MLNPMIYTLRNQEMQAALKRLGMHLLVCRKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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