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Report for CCDS28402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28402.1 Public Mus musculus 17 Unc93a 23 108 98 CCDS HistoryNCBI Gene:381058Re-query CCDS DB by CCDS ID:28402.1Re-query CCDS DB by GeneID:381058See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084966.5 ENSMUSP00000082032.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084966.5Link to Ensembl Protein Viewer:ENSMUSP00000082032.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084966Re-query CCDS DB by Protein ID:ENSMUSP00000082032
Original member Current member EBI ENSMUST00000233405.1 ENSMUSP00000156756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233405.1Link to Ensembl Protein Viewer:ENSMUSP00000156756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233405Re-query CCDS DB by Protein ID:ENSMUSP00000156756
Original member Current member EBI ENSMUST00000232960.1 ENSMUSP00000156970.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232960.1Link to Ensembl Protein Viewer:ENSMUSP00000156970.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232960Re-query CCDS DB by Protein ID:ENSMUSP00000156970
Original member Current member NCBI NM_199252.2 NP_954860.1 Accepted alive Link to Nucleotide Sequence:NM_199252.2Link to Protein Sequence:NP_954860.1Re-query CCDS DB by Nucleotide ID:NM_199252Re-query CCDS DB by Protein ID:NP_954860Link to BLAST:NP_954860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954860.1 458 Q710D3 458 100% 0 0

Chromosomal Locations for CCDS 28402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 13109588 13109853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13115500 13115631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13116179 13116314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13117620 13117837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13120761 13120886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13122744 13122973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13123270 13123451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13125567 13125653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGAGAGGAGTCTGAAGAATGTTCTGGTGGTTTCTTGTGGCTTCCTCCTGCTCTTCACTGCCTACGGGG
GC
CTGCAGAATCTGCAGAGCAGCCTCTACAGTGAGCAGGGCCTGGGGGTGGCGACACTCAGCACACTCTA
T
GCCTCTGTGCTGCTGTCCTCCATGTTCCTCCCACCTATCCTCATCAAGAAGTGTGGCTGCAAGTGGACC
ATC
GTGGGCTCCATGTGCTGCTATGTGGTCTTCTCCCTGGGCAACTTCCATGCCAACTGGTACACCCTGA
TC
CCTACCTCCATCTTGCTGGGCCTGGGTGCGGCCCCTCTGTGGTCGGCTCAGGGTACCTACCTCACCAC
C
ATGGGAAATCTGCAAGCGGAAAAGGTGGGGAAGCTTGGCAAAGATGTGGTGAACCAGTATTTTGGCATC
TTT
TTCCTGGTATTCCAATCTTCTGGAGTGTGGGGCAACCTGATTTCCTCACTGGTGTTCGGCAAGATGT
CC
ATGCAAGAAGCCATCCCAGAGGAACAGCTCATGTCCTGTGGAGCCAAAGACTGCCTGATGGGTCCAGC
G
GCCACCAACAGTACTCATCACCCCTCACAGCAGCTGATCTACACACTGCTGGGCATCTACACCGGCTGT
GGT
GTCCTGGCCATCCTGCTGGTAGCTGTGTTTCTGGAGTCCTTGGAAGATAAGCTTGAGAATGAAGGAG
AG
AGGAGGCCCAGACCACCACCTCTTTGGTCCACATTACTGTCAACCTTCATGCTGTTTAGAGACAAGCG
T
TTGTGTCTCCTGATGTTCCTGCCACTGTACAGTGGGTTTCAACAAGAGTTCCTCTCTGGAGAGTACACA
AAG
TCTTATGTGACCTGTGCCCTGGGTATCCACTTTGTGGGCTACGTGATGATCTGCTTCTCAGCCATGA
CT
GCACTGTGCTCCCTGCTGTATGGGAAGATCTCCAAGTACACGGGCAGGGCGGCGCTCTATGCACTGGG
A
GCAGCCATTCACTTCTCTTGCATTGTGGTCTTCCTGCTGTGGCACCCAAACACCAACCAACTGCCTGTC
TTC
TTCGTCCTCTCTGGCCTGTGGGGAATGTCTGACGCTGTCTGGCAGACACAGAACAATGCTCTTTTCG
GT
GTCCTGTTTGAGGAGAACAAAGAACCTGCTTTTGCCAACTACCGCCTTGGAGAAGCCATAGGGTTTGT
C
ATTGCCTTTGGCTACAGCTCATTTCTGTGTGTGAGTACCAAGCTCTACATCCTCTTGGGTGTCTTGAGT
CTG
GCCATGGTTGGTTACGGGACAGTTGAGTACCTGGAAGTCAAGGCTGCTTCCAAGGTCCTTGGTGCAG
AA
AAGAAAAACCAGGCAGAAGAGGAAGAAATGAAAACAAAAATATAA


Translation (458 aa):
MERSLKNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKCGCKWT
I
VGSMCCYVVFSLGNFHAN
WYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEKVGKLGKDVVNQYFGI
F
FLVFQSSGVWGNLISSLVFGKMSMQ
EAIPEEQLMSCGAKDCLMGPAATNSTHHPSQQLIYTLLGIYTGC
G
VLAILLVAVFLESLEDKLENEGERRPRPPPLWSTLLSTFMLFRDKRLCLLMFLPLYSGFQQEFLSGEYT
K
SYVTCALGIHFVGYVMICFSAMTALCSLLYGKISKYTGRAALYALGAAIHFSCIVVFLLWHPNTNQLPV
F
FVLSGLWGMSDAVWQTQNN
ALFGVLFEENKEPAFANYRLGEAIGFVIAFGYSSFLCVSTKLYILLGVLS
L
AMVGYGTVEYLEVKAASKVLGAEKKNQAEEEEMKTKI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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