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Report for CCDS18394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18394.1 Public Mus musculus 4 Ak4 23 108 98 CCDS HistoryNCBI Gene:11639Re-query CCDS DB by CCDS ID:18394.1Re-query CCDS DB by GeneID:11639See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102780.7 ENSMUSP00000099841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102780.7Link to Ensembl Protein Viewer:ENSMUSP00000099841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102780Re-query CCDS DB by Protein ID:ENSMUSP00000099841
Original member Current member EBI ENSMUST00000106945.7 ENSMUSP00000102558.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106945.7Link to Ensembl Protein Viewer:ENSMUSP00000102558.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106945Re-query CCDS DB by Protein ID:ENSMUSP00000102558
Original member Current member EBI ENSMUST00000106946.7 ENSMUSP00000102559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106946.7Link to Ensembl Protein Viewer:ENSMUSP00000102559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106946Re-query CCDS DB by Protein ID:ENSMUSP00000102559
Original member Current member NCBI NM_001177602.1 NP_001171073.1 Accepted alive Link to Nucleotide Sequence:NM_001177602.1Link to Protein Sequence:NP_001171073.1Re-query CCDS DB by Nucleotide ID:NM_001177602Re-query CCDS DB by Protein ID:NP_001171073Link to BLAST:NP_001171073.1
Original member Current member NCBI NM_001177604.1 NP_001171075.1 Accepted alive Link to Nucleotide Sequence:NM_001177604.1Link to Protein Sequence:NP_001171075.1Re-query CCDS DB by Nucleotide ID:NM_001177604Re-query CCDS DB by Protein ID:NP_001171075Link to BLAST:NP_001171075.1
Original member Current member NCBI NM_001177605.1 NP_001171076.1 Accepted alive Link to Nucleotide Sequence:NM_001177605.1Link to Protein Sequence:NP_001171076.1Re-query CCDS DB by Nucleotide ID:NM_001177605Re-query CCDS DB by Protein ID:NP_001171076Link to BLAST:NP_001171076.1
Original member Current member NCBI NM_009647.5 NP_033777.1 Accepted alive Link to Nucleotide Sequence:NM_009647.5Link to Protein Sequence:NP_033777.1Re-query CCDS DB by Nucleotide ID:NM_009647Re-query CCDS DB by Protein ID:NP_033777Link to BLAST:NP_033777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171073.1 223 Q9WUR9 223 100% 0 0
NP_001171075.1 223 Q9WUR9 223 100% 0 0
NP_001171076.1 223 Q9WUR9 223 100% 0 0
NP_033777.1 223 Q9WUR9 223 100% 0 0

Chromosomal Locations for CCDS 18394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101419821 101419965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101447160 101447279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101460500 101460672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101462949 101463067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101463553 101463667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCTTCCAAACTCCTGCGCGCGGTCATCCTCGGGCCGCCCGGCTCTGGCAAGGGCACCGTTTGCGAAA
GGATCGCCCAGAACTTTGGCCTCCAGCATCTCTCCAGCGGCCACTTGTTGCGGGAGAACCTCAAGACCGG
CACGGAAGTTGGTGACGTGGCAAAACAGTACCTAGAAAAAGGTCTTTTGGTTCCAGATCACGTGATCACA
CGCCTAATGATGTCAGAACTGGAGACTCGGAGTGCCCAGCACTGGCTGTTAGATGGATTCCCGAGGACAT
TAGTACAGGCAGAAGCCCTGGACGGAATCTGTGATGTGGACCTAGTAATCAGTTTGAATATTCCTTTTGA
GACACTTAAAGATCGTCTGAGCCGACGGTGGATTCACCCTTCTAGCGGGAGGGTCTATAACCTGGACTTC
AACCCACCTCAAGTGCAGGGGATTGATGACATCACTGGTGAGCCACTTGTCCAACAGGAAGATGATAAAC
CTGAAGCAGTTGCTGCCAGGCTAAGACGGTACAAGGATGCGGCAAAACCAGTCATCGAACTGTACAAGAG
CCGTGGAGTGCTCCACCAGTTTTCTGGGACGGAGACTAACAGAATCTGGCCTTATGTTTACACACTTTTC
TCCAACAAGATCACACCTATTCAATCCAAAGAAGCCTACTGA

Translation (223 aa):
MASKLLRAVILGPPGSGKGTVCERIAQNFGLQHLSSGHLLRENLKTGTEVGDVAKQYLEKGLLVPDHVIT
RLMMSELETRSAQHWLLDGFPRTLVQAEALDGICDVDLVISLNIPFETLKDRLSRRWIHPSSGRVYNLDF
NPPQVQGIDDITGEPLVQQEDDKPEAVAARLRRYKDAAKPVIELYKSRGVLHQFSGTETNRIWPYVYTLF
SNKITPIQSKEAY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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