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Report for CCDS37381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37381.1 Public Mus musculus 16 Jam2 23 108 98 CCDS HistoryNCBI Gene:67374Re-query CCDS DB by CCDS ID:37381.1Re-query CCDS DB by GeneID:67374See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114195.7 ENSMUSP00000109833.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114195.7Link to Ensembl Protein Viewer:ENSMUSP00000109833.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114195Re-query CCDS DB by Protein ID:ENSMUSP00000109833
Original member Current member NCBI NM_023844.5 NP_076333.3 Accepted alive Link to Nucleotide Sequence:NM_023844.5Link to Protein Sequence:NP_076333.3Re-query CCDS DB by Nucleotide ID:NM_023844Re-query CCDS DB by Protein ID:NP_076333Link to BLAST:NP_076333.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076333.3 298 Q9JI59 298 100% 0 0

Chromosomal Locations for CCDS 37381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 84774487 84774553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84801570 84801638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84806835 84806942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84809344 84809496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84812899 84813098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84815169 84815268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84816266 84816373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84818760 84818775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84821260 84821302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84822787 84822819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGCGAGGAGCCCCCAAGGCCTCCTGATGCTGCTGCTGCTACACTACTTGATCGTCGCCCTGGACTATC
ATAAGGCAAATGGGTTTTCTGCATCAAAAGACCACCGTCAAGAAGTCACAGTAATAGAGTTCCAAGAGGC
TATTTTGGCTTGTAAAACCCCAAAGAAGACTACCTCCTCCAGACTGGAGTGGAAGAAGGTGGGACAGGGG
GTCTCCTTGGTCTACTACCAACAGGCTCTCCAAGGTGACTTTAAAGACCGTGCTGAGATGATAGATTTCA
ATATACGAATCAAAAATGTTACAAGAAGTGATGCTGGAGAGTATCGCTGTGAAGTCAGCGCTCCGACTGA
GCAAGGCCAGAACCTGCAGGAAGATAAAGTCATGCTAGAAGTACTAGTGGCTCCTGCTGTTCCTGCCTGT
GAAGTGCCCACTTCTGTTATGACTGGAAGTGTGGTGGAGCTACGATGCCAGGATAAAGAAGGAAACCCAG
CTCCGGAGTACATCTGGTTTAAAGATGGCACAAGTTTGCTAGGGAATCCAAAAGGCGGCACACACAACAA
CAGCTCGTACACAATGAACACGAAGTCTGGAATTCTGCAATTCAACATGATTTCCAAGATGGACAGTGGA
GAGTATTACTGCGAAGCCCGGAACTCTGTCGGACACCGCAGGTGCCCTGGGAAGCGAATGCAAGTAGATG
TTCTCAACATAAGCGGCATCATAGCAACGGTTGTGGTGGTGGCCTTCGTGATTTCTGTATGTGGCCTTGG
CACATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACTTCCTTCCAGAAGGGCAGTCCTGCATCT
AAAGTCACTACGATGAGCGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAA

Translation (298 aa):
MARSPQGLLMLLLLHYLIVALDYHKANGFSASKDHRQEVTVIEFQEAILACKTPKKTTSSRLEWKKVGQG
VSLVYYQQALQGDFKDRAEMIDFNIRIKNVTRSDAGEYRCEVSAPTEQGQNLQEDKVMLEVLVAPAVPAC
EVPTSVMTGSVVELRCQDKEGNPAPEYIWFKDGTSLLGNPKGGTHNNSSYTMNTKSGILQFNMISKMDSG
EYYCEARNSVGHRRCPGKRMQVDVLNISGIIATVVVVAFVISVCGLGTCYAQRKGYFSKETSFQKGSPAS
KVTTMSENDFKHTKSFII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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