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Report for CCDS22488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22488.1 Public Mus musculus 8 Junb 23 108 98 CCDS HistoryNCBI Gene:16477Re-query CCDS DB by CCDS ID:22488.1Re-query CCDS DB by GeneID:16477See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064922.6 ENSMUSP00000064680.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064922.6Link to Ensembl Protein Viewer:ENSMUSP00000064680.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064922Re-query CCDS DB by Protein ID:ENSMUSP00000064680
Original member Current member NCBI NM_008416.3 NP_032442.1 Accepted alive Link to Nucleotide Sequence:NM_008416.3Link to Protein Sequence:NP_032442.1Re-query CCDS DB by Nucleotide ID:NM_008416Re-query CCDS DB by Protein ID:NP_032442Link to BLAST:NP_032442.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032442.1 344 P09450 344 100% 0 0

Chromosomal Locations for CCDS 22488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84977395 84978429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGTGCACGAAAATGGAACAGCCTTTCTATCACGACGACTCTTACGCAGCGGCGGGATACGGTCGGAGCC
CT
GGCAGCCTGTCTCTACACGACTACAAACTCCTGAAACCCACCTTGGCGCTCAACCTGGCGGATCCCTA
T
CGGGGTCTCAAGGGTCCTGGGGCGCGGGGTCCAGGCCCGGAGGGCAGTGGGGCAGGCAGCTACTTTTCG
GGT
CAGGGATCAGACACAGGCGCATCTCTGAAGCTAGCCTCCACGGAACTGGAGCGCTTGATCGTCCCCA
AC
AGCAACGGCGTGATCACGACGACGCCCACGCCTCCGGGACAGTACTTTTACCCCCGTGGGGGTGGCAG
C
GGTGGAGGTACAGGGGGCGGCGTCACCGAGGAGCAGGAGGGCTTTGCGGACGGTTTTGTCAAAGCCCTG
GAC
GACCTGCACAAGATGAACCACGTGACGCCCCCCAACGTGTCCCTGGGCGCCAGCGGGGGTCCCCAGG
CC
GGCCCAGGGGGCGTCTATGCTGGTCCGGAGCCGCCTCCCGTCTACACCAACCTCAGCAGTTACTCCCC
A
GCCTCTGCACCCTCTGGAGGCTCCGGGACCGCCGTCGGGACTGGGAGCTCATACCCGACGGCCACCATC
AGC
TACCTCCCACATGCACCACCCTTTGCGGGCGGCCACCCGGCACAGCTGGGCTTGAGTCGCGGCGCTT
CC
GCCTTTAAAGAGGAACCGCAGACCGTACCGGAGGCACGCAGCCGCGACGCCACGCCGCCTGTGTCCCC
C
ATCAACATGGAAGACCAGGAGCGCATCAAAGTGGAGCGAAAGCGGCTGCGGAACAGGCTGGCGGCCACC
AAG
TGCCGGAAGCGGAAGCTGGAGCGCATCGCGCGCCTGGAGGACAAGGTGAAGACACTCAAGGCTGAGA
AC
GCGGGGCTGTCGAGTGCTGCCGGTCTCCTACGGGAGCAAGTGGCGCAGCTCAAGCAGAAGGTCATGAC
C
CATGTCAGCAACGGCTGCCAGTTGCTGCTAGGGGTCAAGGGACACGCCTTCTGA


Translation (344 aa):
MCTKMEQPFYHDDSYAAAGYGRSPGSLSLHDYKLLKPTLALNLADPYRGLKGPGARGPGPEGSGAGSYFS
G
QGSDTGASLKLASTELERLIVPNSNGVITTTPTPPGQYFYPRGGGSGGGTGGGVTEEQEGFADGFVKAL
D
DLHKMNHVTPPNVSLGASGGPQAGPGGVYAGPEPPPVYTNLSSYSPASAPSGGSGTAVGTGSSYPTATI
S
YLPHAPPFAGGHPAQLGLSRGASAFKEEPQTVPEARSRDATPPVSPINMEDQERIKVERKRLRNRLAAT
K
CRKRKLERIARLEDKVKTLKAENAGLSSAAGLLREQVAQLKQKVMTHVSNGCQLLLGVKGHAF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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