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Report for CCDS15911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15911.1 Public Mus musculus 2 Ciz1 23 108 98 CCDS HistoryNCBI Gene:68379Re-query CCDS DB by CCDS ID:15911.1Re-query CCDS DB by GeneID:68379See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048964.13 ENSMUSP00000048428.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048964.13Link to Ensembl Protein Viewer:ENSMUSP00000048428.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048964Re-query CCDS DB by Protein ID:ENSMUSP00000048428
Original member Current member EBI ENSMUST00000113334.7 ENSMUSP00000108960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113334.7Link to Ensembl Protein Viewer:ENSMUSP00000108960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113334Re-query CCDS DB by Protein ID:ENSMUSP00000108960
Original member Current member EBI ENSMUST00000113338.8 ENSMUSP00000108964.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113338.8Link to Ensembl Protein Viewer:ENSMUSP00000108964.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113338Re-query CCDS DB by Protein ID:ENSMUSP00000108964
Original member NCBI NM_028412.2 NP_082688.1 Updated not alive Link to Nucleotide Sequence:NM_028412.2Link to Protein Sequence:NP_082688.1Re-query CCDS DB by Nucleotide ID:NM_028412Re-query CCDS DB by Protein ID:NP_082688
Current member NCBI NM_028412.3 NP_082688.1 Accepted alive Link to Nucleotide Sequence:NM_028412.3Link to Protein Sequence:NP_082688.1Re-query CCDS DB by Nucleotide ID:NM_028412Re-query CCDS DB by Protein ID:NP_082688Link to BLAST:NP_082688.1

Chromosomal Locations for CCDS 15911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32363810 32363979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32364219 32364334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32365803 32365874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32367303 32367532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32370032 32370125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32370242 32370344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32370864 32371408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32371636 32371757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32372298 32372495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32374342 32374466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32375485 32375572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32376009 32376122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32376266 32376427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32377293 32377362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32377509 32377630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32377964 32378170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGTTCAACCCGCAACTCCAGCAGCAGCAACAGTTGCAGCAGCAGCAGCAACAGTTGCAGCAGCAGCTCC
AGCAGCAGCAGCTCCAGCAGCAGCAACAGCAGATACTGCAGCTCCAACAGCTGCTGCAACAGTCCCCACC
ACAGGCCTCCTTGTCCATTCCTGTCAGCCGGGGCCTCCCCCAGCAGTCATCCCCGCAACAGCTTCTGAGT
CTCCAGGGCCTCCACTCGACCTCCCTGCTCAATGGCCCCATGCTGCAAAGAGCTTTGCTCCTACAGCAGT
TGCAAGGACTGGACCAGTTTGCAATGCCACCAGCCACGTATGACGGTGCCAGCCTCACCATGCCTACGGC
AACACTGGGTAACCTCCGTGCTTTCAATGTGACAGCCCCAAGCCTAGCAGCTCCCAGCCTTACACCACCC
CAGATGGTCACCCCAAATCTGCAGCAGTTCTTTCCCCAGGCTACTCGACAGTCTCTGCTGGGGCCTCCTC
CTGTTGGGGTCCCAATAAACCCTTCTCAGCTCAACCACTCAGGGAGGAACACCCAGAAACAGGCCAGAAC
CCCCTCTTCCACCACCCCCAATCGCAAGGATTCTTCTTCTCAGACGGTGCCTCTGGAAGACAGGGAAGAC
CCCACAGAGGGGTCTGAGGAAGCCACGGAGCTCCAGATGGACACATGTGAAGACCAAGATTCACTAGTCG
GTCCAGATAGCATGCTGAGTGAGCCCCAAGTGCCTGAGCCTGAGCCCTTTGAGACATTGGAACCACCAGC
CAAGAGGTGCAGGAGCTCAGAGGAGTCCACCGAGAAAGGCCCTACAGGGCAGCCACAAGCAAGGGTCCAG
CCTCAGACCCAGATGACAGCACCAAAGCAGACACAGACCCCGGATCGGCTGCCTGAGCCACCAGAAGTCC
AAATGCTGCCGCGTATCCAGCCACAGGCACTGCAGATCCAGACCCAGCCAAAGCTGCTGAGGCAGGCACA
GACACAGACCTCTCCAGAGCACTTAGCGCCCCAGCAGGATCAGGTAGAGCCACAGGTACCATCACAGCCC
CCATGGCAGTTGCAGCCACGGGAGACAGACCCACCGAACCAAGCTCAGGCACAGACCCAGCCTCAGCCCC
TCTGGCAGGCGCAGTCACAGAAGCAGGCCCAGACACAGGCACATCCACAGGTACCCACCCAAGCACAGTC
ACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCAGTACCCCCACCA
GAACAAGCGTCAGGTCCAGCCTGTGCCACGGAACCACAGCTATCCTCTCACGCTGCAGAAGCTGGGAGTG
ACCCAGACAAGGCCTTGCCAGAACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCGGGAGGCGTCCGC
TGGTGGCCTGGATTTGGGAGAATGTGAAAAGAGAGCGGGAGAGATGCTGGGGATGTGGGGGGCTGGGAGC
TCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCCTTTAACACCACACCCCTCACATCTGGAC
CTCGCCCTGGGGACTCTACCTCTGCCACCCCTGCCATTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTT
CTTCTGCTACATCTGCAAGGCCAGCAGCAGCAGCCAGCAGGAGTTCCAGGATCACATGTCAGAGGCTCAG
CACCAACAGCGGCTTGGGGAAATACAACACTCGAGCCAGACCTGCCTGCTGTCCCTGCTGCCCATGCCTC
GGGACATCCTGGAGAAAGAAGCGGAAGATCCTCCGCCCAAACGCTGGTGCAACACCTGCCAGGTGTACTA
CGTGGGAGACTTGATCCAGCACCGTAGGACACAGGAGCACAAGGTTGCCAAACAATCCCTGAGGCCCTTC
TGCACCATATGCAACCGTTACTTCAAGACCCCTCGAAAGTTTGTGGAGCACGTGAAGTCCCAGGGACACA
AGGACAAGGCCCAAGAGCTGAAGACACTTGAAAAGGAGACAGGCAGCCCAGATGAGGACCACTTCATCAC
TGTGGACGCCGTCGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGACGACGAGGAAGAAGAAGAA
GAAGGAGAGATTGAGGCTGAGGAGGAATTCTGCAAGCAGGTGAAGCCGAGAGAAACATCCTCAGAGCAAG
GGAAGGGCTCTGAGACGTACAACCCCAACACAGCCTATGGTGAGGATTTCCTGGTGCCAGTGATGGGCTA
TGTCTGTCAAATCTGTCACAAGTTCTACGACAGCAACTCAGAATTGCGGCTTTCTCACTGCAAGTCCCTG
GCCCACTTTGAGAACCTGCAGAAATACAAAGCCAAGAACCCAAGCCCTCCTCCTACCCGGCCTGTGAGCC
GCAAGTGTGCCATCAACGCCCGCAACGCCCTGACTGCACTGTTCACCTCTAGCCACCAGCCCAGCCCCCA
GGACACAGTGAAAATGCCCAGCAAGGTGAAGCCTGGATCCCCCGGACTCCCTCCTCCCCTTCGGCGCTCA
ACACGCCTCAAAACCTGA

Translation (845 aa):
MFNPQLQQQQQLQQQQQQLQQQLQQQQLQQQQQQILQLQQLLQQSPPQASLSIPVSRGLPQQSSPQQLLS
LQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAFNVTAPSLAAPSLTPP
QMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKDSSSQTVPLEDRED
PTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEKGPTGQPQARVQ
PQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQP
PWQLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPP
EQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASAGGLDLGECEKRAGEMLGMWGAGS
SLKVTILQSSNSRAFNTTPLTSGPRPGDSTSATPAIASTPSKQSLQFFCYICKASSSSQQEFQDHMSEAQ
HQQRLGEIQHSSQTCLLSLLPMPRDILEKEAEDPPPKRWCNTCQVYYVGDLIQHRRTQEHKVAKQSLRPF
CTICNRYFKTPRKFVEHVKSQGHKDKAQELKTLEKETGSPDEDHFITVDAVGCFESGQEEDEDDDEEEEE
EGEIEAEEEFCKQVKPRETSSEQGKGSETYNPNTAYGEDFLVPVMGYVCQICHKFYDSNSELRLSHCKSL
AHFENLQKYKAKNPSPPPTRPVSRKCAINARNALTALFTSSHQPSPQDTVKMPSKVKPGSPGLPPPLRRS
TRLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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