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Report for CCDS29041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29041.1 Public Mus musculus 18 Epc1 23 108 98 CCDS HistoryNCBI Gene:13831Re-query CCDS DB by CCDS ID:29041.1Re-query CCDS DB by GeneID:13831See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028100.12 ENSMUSP00000028100.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028100.12Link to Ensembl Protein Viewer:ENSMUSP00000028100.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028100Re-query CCDS DB by Protein ID:ENSMUSP00000028100
Original member Current member NCBI NM_027497.3 NP_081773.1 Accepted alive Link to Nucleotide Sequence:NM_027497.3Link to Protein Sequence:NP_081773.1Re-query CCDS DB by Nucleotide ID:NM_027497Re-query CCDS DB by Protein ID:NP_081773Link to BLAST:NP_081773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081773.1 813 Q8C9X6-1 813 100% 0 0

Chromosomal Locations for CCDS 29041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 6437235 6437307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6439592 6439955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6440049 6440190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6441122 6441243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6448905 6449257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6450069 6450217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6450297 6450386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6450466 6450639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6452233 6452392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6453509 6453657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6454187 6454393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6455189 6455334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6462832 6462991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6490463 6490615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGAGTAAACTGTCGTTTCGGGCGCGGGCGCTGGACGCCTCGAAGCCGCTGCCGGTCTTCCGCTGTGAGG
ATCTGCCCGACCTGCACGAATACGCCTCGATAAACCGGGCCGTGCCGCAGATGCCCACCGGGATGGAGAA
GGAAGAGGAGTCGGAACACCATCTTCAGCGGGCTATTTCTGCACAGCAGGTGTACGGCGAGAAGCGGGAT
AACATGGTTATTCCAGTTCCTGAAGCAGAGAGTAACATCGCTTACTATGAGTCCATATACCCTGGGGAGT
TCAGGATGCCAAAGCAGCTCATTCACATACAGCCTTTTAGCTTGGACGCTGAACAGCCTGATTACGATCT
GGATTCTGAAGATGAAGTATTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCATTGCAGTTTGAG
GAGATGATTGACCGGCTAGAAAAAGGCAGCGGTCAGCAGCCAGTCAGTCTGCAGGAAGCCAAACTACTTC
TAAAAGAAGATGATGAGTTAATTAGAGAAGTTTATGAATACTGGATTAAAAAGAGGAAAACCTGCCGGGG
GTCATCACTTATCCCGTTGGTAAAACAGGAAAAGCGAGATGGTTCTAGCACAAATGATCCTTACGTGGCT
TTTAGAAGACGAACTGAGAAAATGCAAACTCGGAAAAACCGTAAGAATGATGAAGCCTCATATGAGAAAA
TGCTCAAGCTGCGCCGCGATCTCAGCCGGGCTGTCACCATCCTGGAAATGATCAAGAGACGGGAGAAGAG
TAAACGGGAGCTGCTGCACCTGACCCTGGAAATCATGGAGAAGAGGTATAATTTAGGTGACTATAGTGGA
GAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACTTATGCCATCCCCATCATCCCGA
TTACTAACAGCAGCCAGTTCAAACACCAGGATGCCACGGACTCGAAGGAGTTCAAAGTTAACAAGCAAGA
TAAGGCTGATCTTATCCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCCCCATCTGCTGCC
GCCCCTCAGCAGCAGAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCC
CCAGCTCAGATGAAGAGCCTCTGTCACAGGTTTTGTCTGGCTCTTCGGAAGCTGAGGAAGAGAATGACCC
TGATGGCCCTTTTGCTTTCCGTAGGAAAGCAGGCTGTCAGTACTATGCTCCTCATTTAGACCAAACTGGC
AACTGGCCCTGGACTAGCCCTAAAGATGGAGGCCTGGGGGATGTGCGATATAGATATTGCTTAACTACTC
TCACCGTACCCCAGAGGTGTCTTGGATTTGCACGAAGACGGGTCGGACGTGGTGGAAGGGTCGTGCTGGA
CAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATTTGGACATGCTTTCCTCACCACAACCT
TCTCCAGTCAATCAGTTTGCCAATACCTCAGAACCCAATACCTCGGACAGATCTTCCTCTAAAGACCTCA
GTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTGCCTGA
CAGTGACAGTGGTGAACTCTCCAGTAGAAAGTTACACAGGAGTATCAGTCGAGCAGGAGCAGCACAGCCT
GGGGCCCACACGTGCAGCACCTCCACCCAGAACAGAAGTAGCAGTGGCTCAGCACACTGTGCATTCACAG
CCGAACAGTACCAGCAGCACCAGCAGCAGCTGGCACTCATGCAGCAGCAGCAGCTTGCGCAGACTCAGCA
GCAGCAGCAAGCAAATAGTAGTTCCTCTGCCGCCGCGCAACAGGGTTTTGTTTCTAAGACGTTGGACTCT
GCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATG
ATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAGGAGTATACAAGGGCTTACACCTCAG
TAGCACTACACCAACGGCACTTGTACATACGAGTCCTTCGACAGCAGGTTCAACTTTGTTACAGCCTTCA
AATATTACACAGACTTCGGGTTCCCACAGCTCACTGAGTCACCAAGTAACTGCTGCCAGCTCTGCAACAA
CTCAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTGTCAC
CCCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCT
GCAGCAAATTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAGGGAAAATCATG
AATCGGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCAATGGAGGTGACGTAG

Translation (813 aa):
MSKLSFRARALDASKPLPVFRCEDLPDLHEYASINRAVPQMPTGMEKEEESEHHLQRAISAQQVYGEKRD
NMVIPVPEAESNIAYYESIYPGEFRMPKQLIHIQPFSLDAEQPDYDLDSEDEVFVNKLKKKMDICPLQFE
EMIDRLEKGSGQQPVSLQEAKLLLKEDDELIREVYEYWIKKRKTCRGSSLIPLVKQEKRDGSSTNDPYVA
FRRRTEKMQTRKNRKNDEASYEKMLKLRRDLSRAVTILEMIKRREKSKRELLHLTLEIMEKRYNLGDYSG
EIMSEVMAQRQPVKPTYAIPIIPITNSSQFKHQDATDSKEFKVNKQDKADLIRPKRKYEKKPKVLPPSAA
APQQQSPAALPGFSAKDLNQYDFPSSDEEPLSQVLSGSSEAEEENDPDGPFAFRRKAGCQYYAPHLDQTG
NWPWTSPKDGGLGDVRYRYCLTTLTVPQRCLGFARRRVGRGGRVVLDRAHSDYDSMFHHLDLDMLSSPQP
SPVNQFANTSEPNTSDRSSSKDLSQILVDIKSCRWRHFRPRTPSLPDSDSGELSSRKLHRSISRAGAAQP
GAHTCSTSTQNRSSSGSAHCAFTAEQYQQHQQQLALMQQQQLAQTQQQQQANSSSSAAAQQGFVSKTLDS
ASAQFAASALMTSEQLLGFKVKDDVVLGLGVNGVLPASGVYKGLHLSSTTPTALVHTSPSTAGSTLLQPS
NITQTSGSHSSLSHQVTAASSATTQVLFGNNIRLTVPSSVPTVNSVTPINARHIPRTLSAVPPSALKLAA
AANCQVSKVPSSSSVDSVPRENHESEKPALNNIADNTVAMEVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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