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Report for CCDS39293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39293.1 Public Mus musculus 5 Tpst1 23 108 98 CCDS HistoryNCBI Gene:22021Re-query CCDS DB by CCDS ID:39293.1Re-query CCDS DB by GeneID:22021See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040721.8 ENSMUSP00000035614.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040721.8Link to Ensembl Protein Viewer:ENSMUSP00000035614.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040721Re-query CCDS DB by Protein ID:ENSMUSP00000035614
Original member Current member EBI ENSMUST00000118993.7 ENSMUSP00000112571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118993.7Link to Ensembl Protein Viewer:ENSMUSP00000112571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118993Re-query CCDS DB by Protein ID:ENSMUSP00000112571
Original member Current member NCBI NM_001130476.2 NP_001123948.1 Accepted alive Link to Nucleotide Sequence:NM_001130476.2Link to Protein Sequence:NP_001123948.1Re-query CCDS DB by Nucleotide ID:NM_001130476Re-query CCDS DB by Protein ID:NP_001123948Link to BLAST:NP_001123948.1
Original member Current member NCBI NM_013837.2 NP_038865.1 Accepted alive Link to Nucleotide Sequence:NM_013837.2Link to Protein Sequence:NP_038865.1Re-query CCDS DB by Nucleotide ID:NM_013837Re-query CCDS DB by Protein ID:NP_038865Link to BLAST:NP_038865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123948.1 370 O70281 370 100% 0 0
NP_038865.1 370 O70281 370 100% 0 0

Chromosomal Locations for CCDS 39293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 130101691 130102535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130114468 130114666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130129508 130129558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130134459 130134476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGTTGGGAAGCTGAAGCAGAACTTACTCTTGGCGTGTCTGGTGATTAGTTCTGTGACCGTGTTTTACC
TGGGCCAGCATGCCATGGAGTGCCATCACCGAATAGAGGAACGTAGCCAGCCAGCCCGACTGGAGAACCC
CAAGGCGACTGTGCGAGCTGGCCTCGACATCAAAGCCAACAAAACATTCACCTATCACAAAGATATGCCT
TTAATATTCATCGGGGGTGTGCCTCGGAGCGGCACCACACTCATGAGGGCTATGCTGGACGCACATCCTG
ACATCCGCTGTGGAGAGGAAACCAGGGTCATCCCTCGAATCCTGGCCCTGAAGCAGATGTGGTCCCGGTC
CAGTAAAGAGAAGATCCGCTTGGATGAGGCGGGTGTCACAGATGAAGTGCTAGATTCTGCCATGCAAGCC
TTCCTTCTGGAGGTCATTGTTAAACATGGGGAGCCGGCACCTTATTTATGTAACAAAGATCCGTTTGCCC
TGAAATCCTTGACTTACCTTGCTAGGTTATTTCCCAATGCCAAATTTCTCCTGATGGTCCGAGATGGCCG
GGCGTCAGTACATTCAATGATTTCTCGGAAAGTTACTATAGCTGGCTTTGACCTGAACAGCTACCGGGAC
TGTCTGACCAAGTGGAACCGGGCCATAGAAACCATGTACAACCAGTGTATGGAAGTTGGTTATAAGAAAT
GCATGTTGGTTCACTATGAACAGCTCGTCTTACACCCTGAACGGTGGATGAGAACGCTCTTAAAGTTCCT
CCATATTCCATGGAACCATTCCGTTTTGCACCATGAAGAAATGATCGGGAAAGCTGGGGGAGTTTCTCTG
TCAAAGGTGGAAAGATCAACAGACCAAGTCATCAAACCCGTCAACGTGGGGGCGCTATCGAAGTGGGTTG
GGAAGATACCCCCGGACGTCTTACAAGACATGGCCGTGATTGCACCCATGCTCGCCAAGCTTGGATATGA
CCCATACGCCAATCCTCCTAACTACGGAAAACCTGACCCCAAGATCCTTGAAAACACCAGGAGGGTCTAT
AAAGGAGAATTTCAGCTCCCTGACTTTCTGAAAGAAAAACCCCAGACGGAGCAAGTGGAGTAA

Translation (370 aa):
MVGKLKQNLLLACLVISSVTVFYLGQHAMECHHRIEERSQPARLENPKATVRAGLDIKANKTFTYHKDMP
LIFIGGVPRSGTTLMRAMLDAHPDIRCGEETRVIPRILALKQMWSRSSKEKIRLDEAGVTDEVLDSAMQA
FLLEVIVKHGEPAPYLCNKDPFALKSLTYLARLFPNAKFLLMVRDGRASVHSMISRKVTIAGFDLNSYRD
CLTKWNRAIETMYNQCMEVGYKKCMLVHYEQLVLHPERWMRTLLKFLHIPWNHSVLHHEEMIGKAGGVSL
SKVERSTDQVIKPVNVGALSKWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKILENTRRVY
KGEFQLPDFLKEKPQTEQVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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