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Report for CCDS29779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29779.1 Public Mus musculus 19 Exoc6 23 108 98 CCDS HistoryNCBI Gene:107371Re-query CCDS DB by CCDS ID:29779.1Re-query CCDS DB by GeneID:107371See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066439.7 ENSMUSP00000064332.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066439.7Link to Ensembl Protein Viewer:ENSMUSP00000064332.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066439Re-query CCDS DB by Protein ID:ENSMUSP00000064332
Original member Current member NCBI NM_175353.2 NP_780562.2 Accepted alive Link to Nucleotide Sequence:NM_175353.2Link to Protein Sequence:NP_780562.2Re-query CCDS DB by Nucleotide ID:NM_175353Re-query CCDS DB by Protein ID:NP_780562Link to BLAST:NP_780562.2

Chromosomal Locations for CCDS 29779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37550465 37550565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37570383 37570554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37571593 37571640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37571858 37571948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37573712 37573757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37576936 37577140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37578420 37578575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37582193 37582261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37585811 37585894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37587638 37587684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37587817 37587937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37589851 37589922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37590868 37590965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37593662 37593767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37597095 37597204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37598566 37598677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37599559 37599693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37608926 37609105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37639622 37639763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37653383 37653456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37681660 37681772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37682846 37682978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGGCGGAGAGCTGCGAGGCTCTGGGCACGGTCCCGGAGCACGAGCGGATCTTGCAGGAGATCGAAAGCA
CCGACACCGCCTGCGTAGGGCCCACCCTCCGATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTT
TATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCAC
CAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAGGTGCAGG
TTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAGGTGATAATCCAAACAGAAGATATTATTCG
GTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAGTGTTGGAG
ATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAGGTATTACTCCGCACTTAAAACAATGGAACAGC
TAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAA
ACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCAT
TCTGACAAAATAGGTGAAGCAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGA
AGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGA
TGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAGGTCTTAACTGTTCAAGATCTC
GTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGGGTGATGAAGAAACATTTGAAA
ATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTGCATGAAAC
AGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGGGTTCTTTGTTGTGGAAGATCACATTTTACAC
GTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTG
CTGTCCTCAGAGCTCACTCATCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGT
AATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATA
AGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAGAAGATA
ATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGA
TCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATT
CAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGCTCAACAGAAATAG
ATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTAT
TAGAAAACCTCATATAGGTTTGACAGAGCTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCT
TGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGAC
TTTATGGACTTTCTACTTTTAAGGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCA
AAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGT
GGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTGGGAAAG
TTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAG
TGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACTGTTT
GCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAGC
TCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTA
CCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAAGATGAAGGACACCAGCAAGAAGAATAAC
ATATTCGCCCAGTTCCGGAAGAATGACCGAGACAGACAGAAGCTGATAGAGACAGTGGTGAGACAGCTCA
GAGGCTTGGTGACTGGTATGTCCCAGCACACGTAG

Translation (804 aa):
MAESCEALGTVPEHERILQEIESTDTACVGPTLRSVYDDQPNAHKKFMEKLDACIRNHDKEIEKMCNFHH
QGFVDAITELLKVRADAEKLKVQVTDTNRRFQDAGKEVIIQTEDIIRCRIQQRNITTVVEKLQLCLPVLE
MYSKLKEQMSMKRYYSALKTMEQLENVYFPRVSQYRFCQLMMETLPKLREDIKDISMSDLKDFLESIRKH
SDKIGEAAMKQAQQQKSFSVALQKQNNMRFGKNMHVNNDRILEEKSDVIPKHALEEEAENDEEVLTVQDL
VDFSPVYRCLHIYSALGDEETFENYYRKQRKKQARLVLQPQSSVHETVDGYRRYFTQIVGFFVVEDHILH
VTQGLVTRVYTEELWNMALSKIIAVLRAHSSYCTDPDLVLELKNLIVIFADTLQGYGFPVNRLFDLLFEI
RDQYNETLLKKWAGIFRDIFEEDNYSPIPIGSEEEYKVVISRFPFQDPDLEKQSFPKKFPMSQSVPLIYI
QVKEFIYASLKFSESLHRSSTEIDDMLRKSTNLLLTRILSSCLLNLIRKPHIGLTELVQIIINTTHLEQA
CKYLEDFITNITNISQETVHTTRLYGLSTFKDARHAAEGEIYTKLNQKIDEFVQLADYDWTMAESDGRAS
GYLMDLINFLRSIFQVFTHLPGKVAQTACMSACQHLSTSLMQMLLDSELKQISMGAVQQFNLDVIQCELF
ASSEPVPGFQGDTLQLAFIDLRQLLDLFMVWDWSTYLADYGQPASKYLRVNPHAALTLLEKMKDTSKKNN
IFAQFRKNDRDRQKLIETVVRQLRGLVTGMSQHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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