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Report for CCDS24809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24809.1 Public Mus musculus 11 Aldh3a2 23 108 98 CCDS HistoryNCBI Gene:11671Re-query CCDS DB by CCDS ID:24809.1Re-query CCDS DB by GeneID:11671See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074127.13 ENSMUSP00000073764.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074127.13Link to Ensembl Protein Viewer:ENSMUSP00000073764.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074127Re-query CCDS DB by Protein ID:ENSMUSP00000073764
Original member NCBI NM_007437.5 NP_031463.2 Updated not alive Link to Nucleotide Sequence:NM_007437.5Link to Protein Sequence:NP_031463.2Re-query CCDS DB by Nucleotide ID:NM_007437Re-query CCDS DB by Protein ID:NP_031463
Current member NCBI NM_007437.6 NP_031463.2 Accepted alive Link to Nucleotide Sequence:NM_007437.6Link to Protein Sequence:NP_031463.2Re-query CCDS DB by Nucleotide ID:NM_007437Re-query CCDS DB by Protein ID:NP_031463Link to BLAST:NP_031463.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031463.2 484 P47740 484 100% 0 0

Chromosomal Locations for CCDS 24809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61246310 61246321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61248862 61249097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61250943 61251042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61253624 61253790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61256739 61256880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61258741 61258858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61262219 61262427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61264246 61264331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61265064 61265295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61266854 61267006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGAGCGCCAGGTCCTACGGCTTCGCCAGGCGTTCCGGTCCGGCCGATCTCGGCCGCTGCGCTTCCGAT
TG
CAGCAGCTTGAGGCCCTGCGGAGGATGGTGCAAGAGCGCGAGAAGGAAATCTTAGCAGCCATCGCGGC
A
GACCTGAGCAAAAGTGAACTCAATGCATACAGTCATGAAGTCATTACCATCCTTGGAGAGATTGATTTT
ATG
TTGGGGAATCTTCCTGAATTGGCTTCTGCGAGACCGGCTAAGAAGAACCTGCTAACCATGATGGATG
AG
GCCTACGTTCAGCCCGAGCCTCTGGGAGTCGTACTGATTATTGGAGCTTGGAATTACCCTTTCGTTCT
T
ACCATGCAACCGCTGGTGGGAGCCATTGCTGCAGGAAATGCTGCCATTGTTAAGCCCTCAGAACTCAGT
GAA
AACACGGCCAAGATCTTGGCTGAACTCCTCCCTCAGTACTTAGACCAGGACCTGTATGCGATTGTTA
AT
GGCGGTATCCCGGAAACCACGGAGCTTCTGAAGCAGCGGTTTGACCACATTCTCTATACAGGGAACAC
T
GCAGTTGGAAAAATTGTCATGGAAGCTGCTGCCAAGCATCTGACCCCTGTGACCCTGGAACTCGGCGGG
AAA
AGCCCTTGTTACATTGACAGAGACTGTGATCTGGACGTGGCTTGCAGACGCATAGCCTGGGGAAAGT
AC
ATGAATTGTGGTCAAACCTGCATTGCTCCTGACTATATCCTGTGCGAAGCCTCCCTCCAGAATCAAAT
C
GTACAGAAGATTAAGGAAACGGTGAAGGACTTTTATGGGGAAAACATAAAGGCTTCTCCTGACTATGAA
AGG
ATCATCAATCTTCGTCACTTTAAGAGGTTACAAAGTCTGCTTAAAGGCCAGAAAATAGCTTTCGGTG
GA
GAGATGGATGAGGCCACACGCTACTTAGCCCCAACCATACTTACAGATGTTGATCCTAACTCCAAGGT
G
ATGCAAGAAGAAATTTTTGGACCAATTCTTCCAATAGTGTCTGTGAAAAATGTAGACGAAGCCATAAAT
TTC
ATAAATGACCGTGAAAAGCCCCTGGCTCTCTACGTATTTTCTCGTAACAATAAGCTCATCAAACGGG
TG
ATAGATGAGACCTCCAGTGGTGGAGTCACCGGCAATGATGTCATCATGCACTTCACTGTTAATTCTCT
G
CCCTTTGGAGGTGTGGGTGCCAGTGGAATGGGGGCGTATCATGGAAAATACAGTTTTGATACCTTTTCT
CAT
CAGCGCCCCTGCTTGTTAAAAGGGTTAAAGGGGGAAAGCGTCAACAAGCTCAGGTACCCGCCCAACA
GC
GAGTCCAAGGTCAGCTGGGCCAAGTTCTTCCTGCTGAAGCAGTTCAACAAAGGAAGGCTGGGGATGCT
G
TTGTTTGTGTGCCTGGTTGCTGTTGCAGCTGTGATTGTCAAGGATCAGCTGTAA


Translation (484 aa):
MERQVLRLRQAFRSGRSRPLRFRLQQLEALRRMVQEREKEILAAIAADLSKSELNAYSHEVITILGEIDF
M
LGNLPELASARPAKKNLLTMMDEAYVQPEPLGVVLIIGAWNYPFVLTMQPLVGAIAA
GNAAIVKPSELS
E
NTAKILAELLPQYLDQ
DLYAIVNGGIPETTELLKQRFDHILYTGNTAVGKIVMEAAAKHLTPVTLELGG
K
SPCYIDRDCDLDVAC
RRIAWGKYMNCGQTCIAPDYILCEASLQNQIVQKIKETVKDFYGENIKASPDYE
R
IINLRHFKRLQSLLKGQKIAFGGEMDEATRYL
APTILTDVDPNSKVMQEEIFGPILPIVSVKNVDEAIN
F
INDREKPLALYVFSRNNK
LIKRVIDETSSGGVTGNDVIMHFTVNSLPFGGVGASGMGAYHGKYSFDTFS
H
QRPCLLKGLKGESVNKLRYPPNSESKVSWAKFFLLKQFNKGRLGMLLFVCLVAVAAVIVK
DQL



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 Genome Browser Links:   Ensembl Genome Browser
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