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Report for CCDS29852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29852.1 Public Mus musculus 19 Hif1an 23 108 98 CCDS HistoryNCBI Gene:319594Re-query CCDS DB by CCDS ID:29852.1Re-query CCDS DB by GeneID:319594See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040455.4 ENSMUSP00000035326.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040455.4Link to Ensembl Protein Viewer:ENSMUSP00000035326.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040455Re-query CCDS DB by Protein ID:ENSMUSP00000035326
Original member Current member NCBI NM_176958.3 NP_795932.2 Accepted alive Link to Nucleotide Sequence:NM_176958.3Link to Protein Sequence:NP_795932.2Re-query CCDS DB by Nucleotide ID:NM_176958Re-query CCDS DB by Protein ID:NP_795932Link to BLAST:NP_795932.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795932.2 349 Q8BLR9-1 349 100% 0 0

Chromosomal Locations for CCDS 29852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44562878 44563054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44563290 44563540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44565878 44566026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44568335 44568480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44569404 44569510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44569893 44569956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44570227 44570337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44571114 44571158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCGGCGACGGCAGCCGAGGTTGCGGCCTCTGGCTCTGGAGAGGCCCGGGAAGAAGCCGAAGCTCCGG
GTCCCGCCTGGGATGAGTCCCAGCTACGAAGTTACAGCTTTCCGACCAGGCCCATCCCACGTCTGAGCCA
GAGTGACCCTCGGGCGGAAGAGCTCATCGAAAATGAGGAGCCAGTGGTGCTGACCGACACAAACCTTGTG
TATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACA
GTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAG
GTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGA
GAAGAGCGGTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGG
GTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTT
GCTCATTGGCATGGAAGGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATA
AAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATC
ACCCCTGTGACAGGCAGAGCCAGGTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAA
TGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTGGTGGCACCAT
ATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAGGGGGCTCCCACCCCTA
AGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGG
AGAGGCCTTGGGGAACCCACAAGAGGTGGGGCCTTTGTTGAACACCATGATTAAAGGCCGTTACAACTAA

Translation (349 aa):
MAATAAEVAASGSGEAREEAEAPGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNLV
YPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMGNFQNFKPRSNREEIKFHEFVEKLQAIQQRGG
EERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQI
KGHKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFRNVVGYETVVGPGDVLYIPMYWWHH
IESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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