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Report for CCDS39689.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39689.2 Public Mus musculus 6 Aebp2 23 108 98 CCDS HistoryNCBI Gene:11569Re-query CCDS DB by CCDS ID:39689.2Re-query CCDS DB by GeneID:11569See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 39689.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39689.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095350.10 ENSMUSP00000092993.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095350.10Link to Ensembl Protein Viewer:ENSMUSP00000092993.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095350Re-query CCDS DB by Protein ID:ENSMUSP00000092993
Original member NCBI NM_009637.4 NP_033767.2 Updated not alive Link to Nucleotide Sequence:NM_009637.4Link to Protein Sequence:NP_033767.2Re-query CCDS DB by Nucleotide ID:NM_009637Re-query CCDS DB by Protein ID:NP_033767
Current member NCBI NM_009637.5 NP_033767.2 Accepted alive Link to Nucleotide Sequence:NM_009637.5Link to Protein Sequence:NP_033767.2Re-query CCDS DB by Nucleotide ID:NM_009637Re-query CCDS DB by Protein ID:NP_033767Link to BLAST:NP_033767.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033767.2 504 Q9Z248-1 504 100% 0 0

Chromosomal Locations for CCDS 39689.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 140623695 140624344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140633689 140633896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140637660 140637767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140642172 140642358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140643948 140644072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140646810 140646877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140647972 140648085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140650756 140650782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140677391 140677418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGCCGCCGCGCTCGCCGACATGGCCGACCTGGAGGAGCTCTCCCGCCTCAGCCCGCTGTCCCCCGGCA
GCCCCGGGCCCGCGGCGCGCGGCCGGGCCGAGCCGCCGGAGGAAGAGGAGGAGGAGGATGACGAGGAGGC
GGAGGCAGAGGCGGTGGCCGCGCTGCTGTTGAACGGGGGAGCGGGCGGCGGCGCGGGGGGCGGCGAGGCG
GAGACCATGTCGGAGCCGAGCCCCGAGAGCGCCAGCCAGGCGGGCGGGGACGAGGACGAGGACGAGGAGG
ACGACGAGGACGAGGGCAGCAGCAGCGGCGGCGCGGAGGAGGAGAGCAGCGCCGAGAGCCTGGTGGGCAG
CAGCAGCGGCGGCTGCAGCGGCGACGAGACGCGCTCGCTGAGCCCGGGCGCGGCGAGCAGCAGCAGCGGC
GATGGGGACGGGAAGGAGGGCCTGGAGGAGCCCAAGGGACCGCGGGGCGGCCCGGGCGGCCCGGGCAGCA
GCGGTGGCGGTAGCAGCAGCAGTAGCGTGGTGTCGAGCGGCGGCGACGAGGGCTACGGCACCGGGGGAGG
CGGGAGCAGCGCGACCTCCGGGGGCCGGCGGGGCAGCCTGGAGATGTCGTCCGACGGGGAGCCGCTGAGC
CGCATGGACTCGGAGGACAGCATAAGCAGTACGCTAATGGACATAGACAGCACAATTTCCAGTGGACGCT
CAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTTG
CTGGGACCAGTGCCAGGCATGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACATGTC
GATGGTCAGCGTGGAGGGGTGTTCGTTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCCGTCAACCA
GTCAGAGTTGGCTACAGCGGCACATGCTGACACACAGTGGAGACAAGCCTTTCAAGTGTGTAGTTGGTGG
CTGCAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCGCCATGTACCCACACACTTCAGTCAGCAGAAC
TCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTCTAAAGCTGGAATGAACAAGCGGA
GGAAACTAAAGAACAAAAGACGGCGCTCATTACCGCGGCCACACGATTTCTTCGATGCACAAACACTGGA
TGCCATAAGACATCGAGCCATCTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGGGAAGGGACACAGT
GTTGTTTTCCACAGTACTGTAATAGCGAAGAGAAAGGAGGAATCTGGAAAGATAAAGCTTTTGCTTCATT
GGATGCCGGAAGACATTCTGCCAGATGTATGGGTGAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT
AGTTCATTTATCAAAGCTACCCAAAGATACTGCCTTGCTGTTGGACCCAAACATTTACAGAACAATGCCG
CAGAAGAGGTTGAAGAGATTTGACATCCTCAATTTCCCAAGGTGA

Translation (504 aa):
MAAALADMADLEELSRLSPLSPGSPGPAARGRAEPPEEEEEEDDEEAEAEAVAALLLNGGAGGGAGGGEA
ETMSEPSPESASQAGGDEDEDEEDDEDEGSSSGGAEEESSAESLVGSSSGGCSGDETRSLSPGAASSSSG
DGDGKEGLEEPKGPRGGPGGPGSSGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLS
RMDSEDSISSTLMDIDSTISSGRSTPAMMNGQGSTTASSKHIAYNCCWDQCQACFNSSPDLADHIRSIHV
DGQRGGVFVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQN
SSKVSSQPKAKEESPSKAGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIESLGKGHS
VVFHSTVIAKRKEESGKIKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKLPKDTALLLDPNIYRTMP
QKRLKRFDILNFPR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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