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Report for CCDS20037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20037.1 Public Mus musculus 6 Clec5a 23 108 98 CCDS HistoryNCBI Gene:23845Re-query CCDS DB by CCDS ID:20037.1Re-query CCDS DB by GeneID:23845See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101491.10 ENSMUSP00000099030.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101491.10Link to Ensembl Protein Viewer:ENSMUSP00000099030.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101491Re-query CCDS DB by Protein ID:ENSMUSP00000099030
Original member Current member NCBI NM_021364.2 NP_067339.1 Accepted alive Link to Nucleotide Sequence:NM_021364.2Link to Protein Sequence:NP_067339.1Re-query CCDS DB by Nucleotide ID:NM_021364Re-query CCDS DB by Protein ID:NP_067339Link to BLAST:NP_067339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067339.1 165 Q9R007-1 165 100% 0 0

Chromosomal Locations for CCDS 20037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40577966 40578080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40579373 40579479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40581800 40581936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40582235 40582294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40585150 40585228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGAACTGGCACATGATCATCTCGGGGCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTC
TGCTGTATTTCTCACAGATCTTTGGGAGAAATGACGAAAGTACCATGCCTACAAGGAGCTATGGAACAGT
CTGTCCCAGAAACTGGGATTTTCACCAAGGAAAATGCTTTTTCTTCTCCTTCTCCGAATCACCTTGGAAA
GACAGCATGGATTATTGTGCAACACAAGGATCCACACTGGCAATTGTCAACACTCCAGAGAAACTGAAGT
ATCTTCAGGACATAGCTGGTATTGAGAATTACTTTATTGGTTTGGTACGTCAGCCTGGAGAGAAAAAGTG
GCGCTGGATCAACAACTCTGTGTTCAATGGCAATGTTACCAATCAGGACCAGAACTTCGACTGTGTCACT
ATAGGTCTGACGAAGACATATGATGCTGCATCATGTGAAGTCAGCTATCGCTGGATCTGCGAAATGAATG
CCAAATGA

Translation (165 aa):
MNWHMIISGLIVVVIKVVGMTFFLLYFSQIFGRNDESTMPTRSYGTVCPRNWDFHQGKCFFFSFSESPWK
DSMDYCATQGSTLAIVNTPEKLKYLQDIAGIENYFIGLVRQPGEKKWRWINNSVFNGNVTNQDQNFDCVT
IGLTKTYDAASCEVSYRWICEMNAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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