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Report for CCDS40722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40722.1 Public Mus musculus 9 Rasgrf1 23 108 98 CCDS HistoryNCBI Gene:19417Re-query CCDS DB by CCDS ID:40722.1Re-query CCDS DB by GeneID:19417See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034912.5 ENSMUSP00000034912.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034912.5Link to Ensembl Protein Viewer:ENSMUSP00000034912.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034912Re-query CCDS DB by Protein ID:ENSMUSP00000034912
Original member Current member NCBI NM_011245.2 NP_035375.1 Accepted alive Link to Nucleotide Sequence:NM_011245.2Link to Protein Sequence:NP_035375.1Re-query CCDS DB by Nucleotide ID:NM_011245Re-query CCDS DB by Protein ID:NP_035375Link to BLAST:NP_035375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035375.1 1262 P27671 1262 100% 0 0

Chromosomal Locations for CCDS 40722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89909998 89910273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89924061 89924170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89944726 89944879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89950908 89951003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89953857 89954110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89967851 89967930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89970353 89970546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89970978 89971087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89974765 89974883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89976684 89976844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89980747 89980810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89981601 89981737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89984266 89984348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89991478 89991726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89994671 89995047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89998667 89998789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90000714 90000887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90001805 90001911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90002352 90002464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90004842 90004902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90009273 90009376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90010395 90010479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90012760 90012957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90017036 90017115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90020313 90020430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90021363 90021431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90026671 90026763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3789 nt):
ATGCAGAAAGCCATCCGGCTTAACGATGGCCACGTCGTGACCCTGGGACTGCTGGCACAGAAGGACGGCA
CGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCT
CCAGAACCTGCTTTTCTACTTCGAAAGCGACTCCAGCCCTCGGCCCTCGGGGCTCTACCTGCTCGAGGGA
AGTATCTGTAAACGCGCGCCCTCCCCCAAGCGAGGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCAAC
ATTACTTCACAGTGAACTTCTCCAATGACAGCCAGAAGACCTTGGAGTTGAGGACCGAGGATGCCAAGGA
CTGTGACGAGTGGGTGGCTGCGATCGCTCGCGCCAGCTACAAGATACTGGCTACAGAACATGAGGCGCTT
ATGCAGAAGTACTTACACCTGCTGCAGGTAGTGGAGACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGC
AGCTTGAGGACGGTGAGGTTGAGATCGAGCGCCTGAAGACGGAGGTAACTATTACAAACCTGATCAAGGA
CAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGACAGTGACATCAAGAAAATT
AAGAAGGTTCAGAGCTTCCTTCGGGGATGGCTGTGCCGGCGAAAGTGGAAGAACATCATCCAGGACTACA
TCCGGTCTCCCCACGCGGACAGCATGCGCAAGAGGAACCAGGTGGTGTTCAGCATGCTGGAGGCCGAGGC
TGAGTACGTCCAGCAGCTACACATCCTTGTCAACAACTTCCTGCGCCCACTGCGCATGGCCGCCAGCTCT
AAGAAACCCCCTATAACACACGACGACGTCAGCAGTATCTTTCTGAACAGCGAGACCATCATGTTCCTGC
ATCAGATCTTCTACCAAGGCCTGAAGGCCCGTATCTCCAGCTGGCCCACCCTGGTGCTGGCGGACCTGTT
CGATATCCTGCTGCCCATGCTGAACATCTACCAGGAGTTCGTCCGCAACCACCAGTACAGCCTCCAGATC
CTTGCTCACTGCAAGCAAAACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCG
AGGAGCGCACACTGGAGACCTTCCTCACCTACCCAATGTTCCAGATCCCCAGGTACATCCTGACACTCCA
TGAGCTGCTGGCCCACACACCTCATGAGCATGTGGAGCGCAACAGCCTGGACTATGCCAAATCCAAACTA
GAGGAACTGTCCAGGATCATGCATGACGAAGTCAGTGAAACCGAGAACATCCGCAAAAACCTGGCCATTG
AGCGTATGATCACGGAGGGCTGTGAGATCCTCCTGGACACCAGCCAGACCTTCGTGCGCCAAGGTTCCCT
CATGCAGATGTCCTTGTCTGAAAAGAGCAAGTCCTCTAGGGGCCGCCTGGGGTCTCTGTCCACTAAGAAA
GAGGGTGAGCGCCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTGCACCAGAGGCTCTGGTGGGAAAC
TGCACCTAACCAAGAATGGAGTCATATCCCTCATTGACTGCACCTTACTGGATGAACCCGAAAACCTGGA
CGACGAAGCCAAAGGAGCCGGACCAGAGATAGAACACCTGGAGTTTAAGATCGGGGTGGAGCCAAAGGAC
TCCCTACCCTTCACTGTCATCCTGGTAGCCTCAACCAGGCAGGAGAAGGCAGCATGGACCAGTGACATCA
TCCAGTGCGTGGATAATATCCGCTGCAATGGGCTCATGATGAATGCCTTTGAAGAAAATTCCAAGGTCAC
CGTGCCTCAGATGATCAAGTCTGACGCTTCCTTATATTGTGATGATGTTGACATTCGCTTCAGCAAAACC
ATGAATTCTTGCAAAGTGCTTCAGATCCGCTATGCCAGCGTGGAGCGCCTGCTGGAGCGCCTGACTGATC
TTCGCTTCCTGAGCATTGACTTTCTCAACACCTTCCTGCATTCCTATCGCGTCTTCACCAATGCTATGGT
GGTCCTGGACAAGCTGATCAATATCTACAGAAAACCCATGAGTGCGATTCCTGCCAGGTCCCTGGAACTC
TTGTTTTCCAGCAGCCACAACGCCAAGCTTCTGTACGGAGATGCCCCTAAGTCCCCTCGCGCCAGCCGCA
AGTTCTCCTCGCCACCGCCCTTGGCCATCGGGACGTCATCCCCCAGCCGCCGTCGGAAGCTGTCCCTCAA
CATCCCCATCATCACAGGCGGCAAGGCGCTGGAACTGGCTTCCCTTGGGTGCAGCTCCGATAGCTACGCC
AACATACACTCACCCATATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCA
GCTTACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGATTCCAGAGAAGCCTGGGGAGCTCTCAGC
CTCCAGGAAGCATAGCTCTGATGTCCTGAAAGAAGAGTCCGAGGATGACCAGAACCACAGTGATGAAGAC
AACACAGAAGTGTCACCAGTTAAATCCCCACCAACACCAAAATCGTTCTTAAACAGAACCATTACAGAGT
TTCCATTCTTTAACTACAACAATGGAATCCTGATGACCACGTGTCGTGATCTGGTGGACAATAACCGCAG
CACTCTCTCAGCTACTTCTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAG
GTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACAAGGAGTTTG
TGATCCGCAGAGCTGCCACCAATCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGGA
CTTTGATACCGACGATACGCTCAAATACAGGGTGATCTGTTTCCTGGAGGAGGTCATGCATGACCCAGAC
CTTCTGACCCAAGAGCGAAAGGCAGCAGCCAACATCATCAGGACTCTGACCCTAGAAGAAACAACTGAAC
AACATAGCATGCTGGAAGAAGTCATACTGATGACGGAGGGTGTGAAGACTGAGCCCTTCGAAAACCACCC
AGCCCTGGAGATAGCAGAGCAGCTGACCCTGCTGGATCACCTTGTCTTCAAGAGTATTCCTTATGAAGAG
TTCTTTGGCCAGGGCTGGATGAAGGCCGAGAAGTATGAAAGGACACCTTACATTATGAAAACCACCAAAC
ACTTCAACCATGTCAGTAACTTCATTGCTTCAGAAATTATCCGAAACGAGGACATCAGCGCAAGGGCAAG
CGCCATCGAGAAGTGGGTGGCTGTGGCCGACATATGTCGCTGCCTGCACAACTACAATGCTGTGCTGGAG
ATCACCTCCTCCATCAACCGCAGCGCCATCTTCCGTCTCAAAAAGACATGGCTCAAAGTTTCTAAGCAGA
CGAAATCTTTGCTTGACAAGCTCCAAAAGCTTGTGTCATCAGATGGCAGATTTAAGAACCTCAGAGAGTC
TTTGAGAAATTGTGATCCACCCTGTGTCCCTTACCTGGGGATGTATCTCACCGACTTGGTGTTCATCGAG
GAGGGGACACCCAATTACACAGAGGACGGCCTGGTCAACTTCTCCAAGATGAGAATGATCTCCCATATTA
TCCGAGAGATTCGCCAGTTTCAGCAGACTACCTACAAAATCGACCCCCAGCCAAAGGTAATTCAGTACTT
ACTGGATGAATCTTTCATGTTGGACGAAGAAAGCCTGTATGAGTCTTCGCTCCTAATCGAACCAAAACTC
CCCACATGA

Translation (1262 aa):
MQKAIRLNDGHVVTLGLLAQKDGTRKGYLSKRSADNPKWQTKWFALLQNLLFYFESDSSPRPSGLYLLEG
SICKRAPSPKRGTSSKESGEKQQHYFTVNFSNDSQKTLELRTEDAKDCDEWVAAIARASYKILATEHEAL
MQKYLHLLQVVETEKTVAKQLRQQLEDGEVEIERLKTEVTITNLIKDNDRIQSSNKAGSADDEDSDIKKI
KKVQSFLRGWLCRRKWKNIIQDYIRSPHADSMRKRNQVVFSMLEAEAEYVQQLHILVNNFLRPLRMAASS
KKPPITHDDVSSIFLNSETIMFLHQIFYQGLKARISSWPTLVLADLFDILLPMLNIYQEFVRNHQYSLQI
LAHCKQNRDFDKLLKQYEAKPDCEERTLETFLTYPMFQIPRYILTLHELLAHTPHEHVERNSLDYAKSKL
EELSRIMHDEVSETENIRKNLAIERMITEGCEILLDTSQTFVRQGSLMQMSLSEKSKSSRGRLGSLSTKK
EGERQCFLFSKHLIICTRGSGGKLHLTKNGVISLIDCTLLDEPENLDDEAKGAGPEIEHLEFKIGVEPKD
SLPFTVILVASTRQEKAAWTSDIIQCVDNIRCNGLMMNAFEENSKVTVPQMIKSDASLYCDDVDIRFSKT
MNSCKVLQIRYASVERLLERLTDLRFLSIDFLNTFLHSYRVFTNAMVVLDKLINIYRKPMSAIPARSLEL
LFSSSHNAKLLYGDAPKSPRASRKFSSPPPLAIGTSSPSRRRKLSLNIPIITGGKALELASLGCSSDSYA
NIHSPISPFGKTTLDTGKLCMASSLPKTPEEIDVPATIPEKPGELSASRKHSSDVLKEESEDDQNHSDED
NTEVSPVKSPPTPKSFLNRTITEFPFFNYNNGILMTTCRDLVDNNRSTLSATSAFAIATAGANEGPSNKE
VFRRMSLANTGFSSDQRNIDKEFVIRRAATNRVLNVLRHWVTKHTQDFDTDDTLKYRVICFLEEVMHDPD
LLTQERKAAANIIRTLTLEETTEQHSMLEEVILMTEGVKTEPFENHPALEIAEQLTLLDHLVFKSIPYEE
FFGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLE
ITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIE
EGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEESLYESSLLIEPKL
PT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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