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Report for CCDS17833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17833.1 Public Mus musculus 3 Egf 23 108 98 CCDS HistoryNCBI Gene:13645Re-query CCDS DB by CCDS ID:17833.1Re-query CCDS DB by GeneID:13645See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029653.6 ENSMUSP00000029653.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029653.6Link to Ensembl Protein Viewer:ENSMUSP00000029653.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029653Re-query CCDS DB by Protein ID:ENSMUSP00000029653
Original member Current member NCBI NM_010113.4 NP_034243.2 Accepted alive Link to Nucleotide Sequence:NM_010113.4Link to Protein Sequence:NP_034243.2Re-query CCDS DB by Nucleotide ID:NM_010113Re-query CCDS DB by Protein ID:NP_034243Link to BLAST:NP_034243.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034243.2 1217 P01132 1217 100% 0 0

Chromosomal Locations for CCDS 17833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129678320 129678555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129681099 129681204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129683191 129683311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129686185 129686352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129690771 129690915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129692918 129693040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129696791 129696916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129697718 129697834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129702456 129702581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129706104 129706250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129707209 129707376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129711253 129711476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129712954 129713058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129716630 129716778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129717924 129718060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129719057 129719182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129720231 129720353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129723270 129723392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129725115 129725240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129735802 129736004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129736757 129736981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129737395 129737576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129739842 129740041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129754817 129754964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3654 nt):
ATGCCCTGGGGCCGAAGGCCAACCTGGCTGTTGCTCGCCTTCCTGCTGGTGTTTTTAAAGATTAGCATAC
TC
AGCGTCACAGCATGGCAGACCGGGAACTGTCAGCCAGGTCCTCTCGAGAGAAGCGAGAGAAGCGGGAC
T
TGTGCCGGTCCTGCCCCCTTCCTAGTTTTCTCACAAGGAAAGAGCATCTCTCGGATTGACCCAGATGGA
ACA
AATCACCAGCAATTGGTGGTGGATGCTGGCATCTCAGCAGACATGGATATTCATTATAAAAAAGAGA
GA
CTCTATTGGGTGGATGTAGAAAGACAAGTTTTGCTAAGAGTTTTCCTTAACGGGACAGGACTAGAGAA
A
GTGTGCAATGTAGAGAGGAAGGTGTCTGGGCTGGCCATAGACTGGATAGATGATGAAGTTCTCTGGGTA
GAC
CAACAGAACGGAGTCATCACCGTAACAGATATGACAGGGAAAAATTCCCGAGTTCTTCTAAGTTCCT
TA
AAACATCCGTCAAATATAGCAGTGGATCCAATAGAGAGGTTGATGTTTTGGTCTTCAGAGGTGACCGG
C
AGCCTTCACAGAGCACACCTCAAAGGTGTTGATGTAAAAACACTGCTGGAGACAGGGGGAATATCGGTG
CTG
ACTCTGGATGTCCTGGACAAACGGCTCTTCTGGGTTCAGGACAGTGGCGAAGGAAGCCACGCTTACA
TT
CATTCCTGTGATTATGAGGGTGGCTCCGTCCGTCTTATCAGGCATCAAGCACGGCACAGTTTGTCTTC
A
ATGGCCTTTTTTGGTGATCGGATCTTCTACTCAGTGTTGAAAAGCAAGGCGATTTGGATAGCCAACAAA
CAC
ACGGGGAAGGACACGGTCAGGATTAACCTCCATCCATCCTTTGTGACACCTGGAAAACTGATGGTAG
TA
CACCCTCGTGCACAGCCCAGGACAGAGGACGCTGCTAAGGATCCTGACCCCGAACTTCTCAAACAGAG
G
GGAAGACCATGCCGCTTCGGTCTCTGTGAGCGAGACCCCAAGTCCCACTCGAGCGCATGCGCTGAGGGC
TAC
ACGTTAAGCCGAGACCGGAAGTACTGCGAAGATGTCAATGAATGTGCCACTCAGAATCACGGCTGTA
CT
CTTGGGTGTGAAAACACCCCTGGATCCTATCACTGCACATGCCCCACAGGATTTGTTCTGCTTCCTGA
T
GGGAAACAATGTCACGAACTTGTTTCCTGCCCAGGCAACGTATCAAAGTGCAGTCATGGCTGTGTCCTG
ACA
TCAGATGGTCCCCGGTGCATCTGTCCTGCAGGTTCAGTGCTTGGGAGAGATGGGAAGACTTGCACTG
GT
TGTTCATCGCCTGACAATGGTGGATGCAGCCAGATCTGTCTTCCTCTCAGGCCAGGATCCTGGGAATG
T
GATTGCTTTCCTGGGTATGACCTACAGTCAGACCGAAAGAGCTGTGCAGCTTCAGGACCACAGCCACTT
TTA
CTGTTTGCAAATTCCCAGGACATCCGACACATGCATTTTGATGGAACAGACTACAAAGTTCTGCTCA
GC
CGGCAGATGGGAATGGTTTTTGCCTTGGATTATGACCCTGTGGAAAGCAAGATATATTTTGCACAGAC
A
GCCCTGAAGTGGATAGAGAGGGCTAATATGGATGGGTCCCAGCGAGAAAGACTGATCACAGAAGGAGTA
GAT
ACGCTTGAAGGTCTTGCCCTGGACTGGATTGGCCGGAGAATCTACTGGACAGACAGTGGGAAGTCTG
TT
GTTGGAGGGAGCGATCTGAGCGGGAAGCATCATCGAATAATCATCCAGGAGAGAATCTCGAGGCCGCG
A
GGAATAGCTGTGCATCCAAGGGCCAGGAGACTGTTCTGGACGGACGTAGGGATGTCTCCACGGATTGAA
AGC
GCTTCCCTTCAAGGTTCCGACCGGGTGCTGATAGCCAGCTCCAATCTACTGGAACCCAGTGGAATCA
CG
ATTGACTACTTAACAGACACTTTGTACTGGTGTGACACCAAGAGGTCTGTGATTGAAATGGCCAATCT
G
GATGGCTCCAAACGCCGAAGACTTATCCAGAACGACGTAGGTCACCCCTTCTCTCTAGCCGTGTTTGAG
GAT
CACCTGTGGGTCTCGGATTGGGCTATCCCATCGGTAATAAGGGTGAACAAGAGGACTGGCCAAAACA
GG
GTACGTCTTCAAGGCAGCATGCTGAAGCCCTCGTCACTGGTTGTGGTCCATCCATTGGCAAAACCAGG
T
GCAGATCCCTGCTTATACAGGAATGGAGGCTGTGAACACATCTGCCAAGAGAGCCTGGGCACAGCTCGG
TGT
TTGTGTCGTGAAGGTTTTGTGAAGGCCTGGGATGGGAAAATGTGTCTCCCTCAGGATTATCCAATCC
TG
TCAGGTGAAAATGCTGATCTTAGTAAAGAGGTGACATCACTGAGCAACTCCACTCAGGCTGAAGTACC
A
GACGATGATGGGACAGAATCTTCCACACTAGTGGCTGAAATCATGGTGTCAGGCATGAACTATGAAGAT
GAC
TGTGGTCCCGGGGGGTGTGGAAGCCATGCTCGATGCGTTTCAGACGGAGAGACTGCTGAGTGTCAGT
GT
CTGAAAGGGTTTGCCAGGGATGGAAACCTGTGTTCTGATATAGATGAGTGTGTGCTGGCTAGATCGGA
C
TGCCCCAGCACCTCGTCCAGGTGCATCAACACTGAAGGTGGCTACGTCTGCAGATGCTCAGAAGGCTAC
GAA
GGAGACGGGATCTCCTGTTTCGATATTGACGAGTGCCAGCGGGGGGCGCACAACTGCGGTGAGAATG
CC
GCCTGCACCAACACGGAGGGAGGCTACAACTGCACCTGCGCAGGCCGCCCATCCTCGCCCGGACTGAG
T
TGCCCTGACTCTACCGCACCCTCTCTCCTTGGGGAAGATGGCCACCATTTGGACCGAAATAGTTATCCA
GGA
TGCCCATCCTCATATGATGGATACTGCCTCAATGGTGGCGTGTGCATGCATATTGAATCACTGGACA
GC
TACACATGCAACTGTGTTATTGGCTATTCTGGGGATCGATGCCAGACTCGAGACCTACGATGGTGGGA
A
CTGCGTCATGCTGGCTACGGGCAGAAGCATGACATCATGGTGGTGGCTGTCTGCATGGTGGCACTGGTC
CTG
CTGCTCGTCTTGGGGATGTGGGGGACTTACTACTACAGGACTCGGAAGCAGCTATCAAACCCCCCAA
AG
AACCCTTGTGATGAGCCAAGCGGAAGTGTGAGCAGCAGCGGACCCAACAGCAGCAGCGGGGCAGCTGT
G
GCTTCTTGTCCCCAACCTTGGTTTGTGGTCCTAGAGAAACACCAAGACCCCAAGAATGGGAGTCTGCCT
GCG
GATGGTACGAATGGTGCAGTAGTAGATGCTGGCCTGTCTCCCTCCCTGCAGCTCGGGTCAGTGCATC
TG
ACTTCATGGAGACAGAAGCCCCACATAGATGGAATGGGCACAGGGCAAAGCTGCTGGATTCCACCATC
A
AGTGACAGAGGACCCCAGGAAATAGAGGGAAACTCCCACCTACCCTCCTACAGACCTGTGGGGCCGGAG
AAG
CTGCATTCTCTCCAGTCAGCTAATGGATCGTGTCACGAAAGGGCTCCAGACCTGCCACGGCAGACAG
AG
CCAGTTCAGTAG


Translation (1217 aa):
MPWGRRPTWLLLAFLLVFLKISILSVTAWQTGNCQPGPLERSERSGTCAGPAPFLVFSQGKSISRIDPDG
T
NHQQLVVDAGISADMDIHYKKERLYWVDVERQVLLRVFLNGTGLE
KVCNVERKVSGLAIDWIDDEVLWV
D
QQNGVITVTDMTGKNSRVLLSSLKHPSNIAVDPIE
RLMFWSSEVTGSLHRAHLKGVDVKTLLETGGISV
L
TLDVLDKRLFWVQDSGEGSHAYIHSCDYEGGSVRLIRHQA
RHSLSSMAFFGDRIFYSVLKSKAIWIANK
H
TGKDTVRINLHPSFVTPGKLMVVHPRAQPRTEDAAKDP
DPELLKQRGRPCRFGLCERDPKSHSSACAEG
Y
TLSRDRKYCE
DVNECATQNHGCTLGCENTPGSYHCTCPTGFVLLPDGKQCHELVSCPGNVSKCSHGCVL
T
SDGPRCICPAGSVLGRDGKTCT
GCSSPDNGGCSQICLPLRPGSWECDCFPGYDLQSDRKSCAASGPQPL
L
LFANSQDIRHMHFDGTDYKVLLSRQMGMVFALDYDPVESK
IYFAQTALKWIERANMDGSQRERLITEGV
D
TLEGLALDWIGRRIYWTDS
GKSVVGGSDLSGKHHRIIIQERISRPRGIAVHPRARRLFWTDVGMSPRIE
S
ASLQGSDRVLIASSNLLEPSGITIDYLTDTLYWCDTKRSVIEMANLDGSKRRRLIQNDV
GHPFSLAVFE
D
HLWVSDWAIPSVIRVNKRTGQNRVRLQGSMLKPSSLVVVHPLAKP
GADPCLYRNGGCEHICQESLGTAR
C
LCREGFVKAWDGKMCLPQDYPILS
GENADLSKEVTSLSNSTQAEVPDDDGTESSTLVAEIMVSGMNYED
D
CGPGGCGSHARCVSDGETAECQCLKGFARDGNLCS
DIDECVLARSDCPSTSSRCINTEGGYVCRCSEGY
E
GDGISCF
DIDECQRGAHNCGENAACTNTEGGYNCTCAGRPSSPGLSCPDSTAPSLLGEDGHHLDRNSYP
G
CPSSYDGYCLNGGVCMHIESLDSYTC
NCVIGYSGDRCQTRDLRWWELRHAGYGQKHDIMVVAVCMVALV
L
LLVLGMWGTYYY
RTRKQLSNPPKNPCDEPSGSVSSSGPNSSSGAAVASCPQPWFVVLEKHQDPKNGSLP
A
DGTNGAVVDAGLSPSLQL
GSVHLTSWRQKPHIDGMGTGQSCWIPPSSDRGPQEIEGNSHLPSYRPVGPE
K
LHSLQSANGSCHERAPDLPRQTEPVQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser