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Report for CCDS17012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17012.1 Public Mus musculus 2 Hnf4a 23 108 98 CCDS HistoryNCBI Gene:15378Re-query CCDS DB by CCDS ID:17012.1Re-query CCDS DB by GeneID:15378See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018094.12 ENSMUSP00000018094.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018094.12Link to Ensembl Protein Viewer:ENSMUSP00000018094.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018094Re-query CCDS DB by Protein ID:ENSMUSP00000018094
Original member Current member NCBI NM_008261.3 NP_032287.2 Accepted alive Link to Nucleotide Sequence:NM_008261.3Link to Protein Sequence:NP_032287.2Re-query CCDS DB by Nucleotide ID:NM_008261Re-query CCDS DB by Protein ID:NP_032287Link to BLAST:NP_032287.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032287.2 474 P49698-1 474 100% 0 0

Chromosomal Locations for CCDS 17012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163547305 163547419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163551577 163551751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163552560 163552654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163558185 163558291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163558955 163559110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163562519 163562606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163564154 163564309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163566121 163566357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163568887 163569039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163569949 163570091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGCGACTCTCTAAAACCCTTGCCGGCATGGATATGGCCGACTACAGCGCTGCCCTGGACCCAGCCTACA
CCACCCTGGAGTTTGAAAATGTGCAGGTGTTGACCATGGGCAATGACACGTCCCCATCTGAAGGTGCCAA
CCTCAATTCATCCAACAGCCTGGGCGTCAGTGCCCTGTGCGCCATCTGTGGCGACCGGGCCACCGGCAAA
CACTACGGAGCCTCGAGCTGTGACGGCTGCAAGGGGTTCTTCAGGAGGAGCGTGAGGAAGAACCACATGT
ACTCCTGCAGGTTTAGCCGACAATGTGTGGTAGACAAAGATAAGAGGAACCAGTGTCGTTACTGCAGGCT
TAAGAAGTGCTTCCGGGCTGGCATGAAGAAGGAAGCTGTCCAAAATGAGCGGGACCGGATCAGCACGCGG
AGGTCAAGCTACGAGGACAGCAGCCTGCCCTCCATCAACGCGCTCCTGCAGGCAGAGGTTCTGTCCCAGC
AGATCACCTCTCCCATCTCTGGGATCAATGGCGACATTCGGGCAAAGAAGATTGCCAACATCACAGACGT
GTGTGAGTCTATGAAGGAGCAGCTGCTGGTCCTGGTCGAGTGGGCCAAGTACATCCCGGCCTTCTGCGAA
CTCCTTCTGGATGACCAGGTGGCGCTGCTCAGGGCCCACGCCGGTGAGCATCTGCTGCTTGGAGCCACCA
AGAGGTCCATGGTGTTTAAGGACGTGCTGCTCCTAGGCAATGACTACATCGTCCCTCGGCACTGTCCAGA
GCTAGCGGAGATGAGCCGTGTGTCCATCCGCATCCTCGATGAGCTGGTCCTGCCCTTCCAAGAGCTGCAG
ATTGATGACAATGAATATGCCTGCCTCAAAGCCATCATCTTCTTTGATCCAGATGCCAAGGGGCTGAGTG
ACCCGGGCAAGATCAAGCGGCTGCGGTCACAGGTGCAAGTGAGCCTGGAGGATTACATCAACGACCGGCA
GTACGACTCTCGGGGCCGCTTTGGAGAGCTGCTGCTGCTGTTGCCCACGCTGCAGAGCATCACCTGGCAG
ATGATCGAACAGATCCAGTTCATCAAGCTCTTCGGCATGGCCAAGATTGACAACCTGCTGCAGGAGATGC
TTCTCGGAGGGTCTGCCAGTGATGCACCCCACACCCACCACCCCCTGCACCCTCACCTGATGCAAGAACA
CATGGGCACCAATGTCATTGTTGCTAACACGATGCCCTCTCACCTCAGCAATGGACAGATGTGTGAGTGG
CCCCGACCCAGGGGGCAGGCAGCCACTCCCGAGACTCCACAGCCATCACCACCAAGTGGCTCGGGATCTG
AATCCTACAAGCTCCTGCCAGGAGCCATCACCACCATCGTCAAGCCTCCCTCTGCCATTCCCCAGCCAAC
GATCACCAAGCAAGAAGCCATCTAG

Translation (474 aa):
MRLSKTLAGMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGANLNSSNSLGVSALCAICGDRATGK
HYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTR
RSSYEDSSLPSINALLQAEVLSQQITSPISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCE
LLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQ
IDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQ
MIEQIQFIKLFGMAKIDNLLQEMLLGGSASDAPHTHHPLHPHLMQEHMGTNVIVANTMPSHLSNGQMCEW
PRPRGQAATPETPQPSPPSGSGSESYKLLPGAITTIVKPPSAIPQPTITKQEAI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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