NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26585.1 Public Mus musculus 13 Ctsr 23 108 98 CCDS HistoryNCBI Gene:56835Re-query CCDS DB by CCDS ID:26585.1Re-query CCDS DB by GeneID:56835See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021889.5 ENSMUSP00000021889.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021889.5Link to Ensembl Protein Viewer:ENSMUSP00000021889.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021889Re-query CCDS DB by Protein ID:ENSMUSP00000021889
Original member Current member NCBI NM_020284.1 NP_064680.1 Accepted alive Link to Nucleotide Sequence:NM_020284.1Link to Protein Sequence:NP_064680.1Re-query CCDS DB by Nucleotide ID:NM_020284Re-query CCDS DB by Protein ID:NP_064680Link to BLAST:NP_064680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064680.1 334 Q9JIA9 334 100% 0 0

Chromosomal Locations for CCDS 26585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61159476 61159575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61160424 61160541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61161153 61161315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61161770 61161994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61162442 61162591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61162681 61162803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61163105 61163230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCTGCTGTTGTCTTCATAGCCTTCCTGTATTTGGGAGTGGCCTCAGGTGTTCCAGTACTTGATTCAA
GTTTGGATGCTGAATGGCAAGACTGGAAGATAAAGTATAACAAATCATATAGCCTGAAGGAAGAAAAACT
GAAGAGAGTGGTTTGGGAAGAAAAATTGAAAATGATCAAACTACACAACAGGGAGAACAGCCTGGGTAAG
AATGGCTTCACCATGAAAATGAATGAATTTGGTGACCAGACTGATGAAGAATTCAGGAAAATGATGATTG
AAATTTCAGTTTGGACTCACAGAGAGGGGAAAAGTATCATGAAACGGGAAGCTGGCAGTATTCTCCCCAA
ATTTGTCGATTGGCGAAAGAAAGGATATGTGACTCCTGTACGGAGACAGGGAGATTGTGATGCTTGTTGG
GCATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAAACGGGCAAACTCACCCCTCTGAGTG
TGCAGAACCTGGTGGACTGTTCTAAACCTCAAGGCAACAATGGTTGTCTTGGTGGTGATACATACAATGC
CTTCCAGTATGTTTTGCACAATGGTGGTCTGGAGTCTGAGGCAACATATCCATATGAAGGGAAAGATGGA
CCATGCAGGTATAATCCAAAGAATTCTAAGGCTGAAATCACAGGATTTGTGTCCCTCCCCCAAAGTGAGG
ATATCCTAATGGCTGCTGTAGCAACTATTGGGCCCATCACTGCTGGAATTGATGCTTCACATGAGTCTTT
CAAGAACTATAAGGGAGGTATTTACCATGAGCCAAATTGTAGCAGTGATACTGTGACTCATGGAGTCCTC
GTGGTTGGTTACGGATTTAAGGGAATTGAGACCGATGGTAATCACTACTGGCTGATCAAGAATAGCTGGG
GTAAACGATGGGGCATTAGAGGCTACATGAAGCTCGCCAAAGACAAGAACAACCACTGTGGAATTGCTTC
ATATGCTCACTACCCTACTATTTGA

Translation (334 aa):
MAAVVFIAFLYLGVASGVPVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNRENSLGK
NGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDCDACW
AFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKDG
PCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVL
VVGYGFKGIETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIASYAHYPTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH