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Report for CCDS10303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10303.1 Public Homo sapiens 15 PSMA4 24 110 108 CCDS HistoryNCBI Gene:5685Re-query CCDS DB by CCDS ID:10303.1Re-query CCDS DB by GeneID:5685See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000044462.12 ENSP00000044462.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000044462.12Link to Ensembl Protein Viewer:ENSP00000044462.7Re-query CCDS DB by Nucleotide ID:ENST00000044462Re-query CCDS DB by Protein ID:ENSP00000044462
Original member Current member EBI ENST00000559082.5 ENSP00000453887.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559082.5Link to Ensembl Protein Viewer:ENSP00000453887.1Re-query CCDS DB by Nucleotide ID:ENST00000559082Re-query CCDS DB by Protein ID:ENSP00000453887
Original member Current member NCBI NM_001102667.2 NP_001096137.1 Accepted alive Link to Nucleotide Sequence:NM_001102667.2Link to Protein Sequence:NP_001096137.1Re-query CCDS DB by Nucleotide ID:NM_001102667Re-query CCDS DB by Protein ID:NP_001096137Link to BLAST:NP_001096137.1
Original member Current member NCBI NM_001330676.2 NP_001317605.1 Accepted alive Link to Nucleotide Sequence:NM_001330676.2Link to Protein Sequence:NP_001317605.1Re-query CCDS DB by Nucleotide ID:NM_001330676Re-query CCDS DB by Protein ID:NP_001317605Link to BLAST:NP_001317605.1
Original member Current member NCBI NM_002789.6 NP_002780.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002789.6Link to Protein Sequence:NP_002780.1Re-query CCDS DB by Nucleotide ID:NM_002789Re-query CCDS DB by Protein ID:NP_002780Link to BLAST:NP_002780.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096137.1 261 P25789-1 261 100% 0 0
NP_001317605.1 261 P25789-1 261 100% 0 0
NP_002780.1 261 P25789-1 261 100% 0 0

Chromosomal Locations for CCDS 10303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78541928 78541930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78542177 78542219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78542483 78542645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78544190 78544267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78544869 78544957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78545634 78545764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78546575 78546698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78548790 78548944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGTCTCGAAGATATGACTCCAGGACCACTATATTTTCTCCAGAAGGTCGCTTATACCAAGTTGAATATG
CCATGGAAGCTATTGGACATGCAGGCACCTGTTTGGGAATTTTAGCAAATGATGGTGTTTTGCTTGCAGC
AGAGAGACGCAACATCCACAAGCTTCTTGATGAAGTCTTTTTTTCTGAAAAAATTTATAAACTCAATGAG
GACATGGCTTGCAGTGTGGCAGGCATAACTTCTGATGCTAATGTTCTGACTAATGAACTAAGGCTCATTG
CTCAAAGGTATTTATTACAGTATCAGGAGCCAATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATAT
CAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTGCTGTACATTGGCTGGGAT
AAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCA
TTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAA
GTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAA
GTGGAAATTGCAACACTAACAAGAGAGAATGGAAAGACAGTAATCAGAGTTCTCAAACAAAAAGAAGTGG
AGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAACAGAA
AGAAAAGGATAAATAG

Translation (261 aa):
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNE
DMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWD
KHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEK
VEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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