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Report for CCDS84052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84052.1 Public Mus musculus 13 Pde8b 23 108 98 CCDS HistoryNCBI Gene:218461Re-query CCDS DB by CCDS ID:84052.1Re-query CCDS DB by GeneID:218461See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162153.8 ENSMUSP00000124704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162153.8Link to Ensembl Protein Viewer:ENSMUSP00000124704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162153Re-query CCDS DB by Protein ID:ENSMUSP00000124704
Original member NCBI NM_001346782.1 NP_001333711.1 Updated not alive Link to Nucleotide Sequence:NM_001346782.1Link to Protein Sequence:NP_001333711.1Re-query CCDS DB by Nucleotide ID:NM_001346782Re-query CCDS DB by Protein ID:NP_001333711
Current member NCBI NM_001346782.2 NP_001333711.1 Accepted alive Link to Nucleotide Sequence:NM_001346782.2Link to Protein Sequence:NP_001333711.1Re-query CCDS DB by Nucleotide ID:NM_001346782Re-query CCDS DB by Protein ID:NP_001333711Link to BLAST:NP_001333711.1

Chromosomal Locations for CCDS 84052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95026120 95026229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95027618 95027747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95030313 95030480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95032830 95032950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95034169 95034386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95041865 95042063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95042900 95043035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95043427 95043472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95046322 95046486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95047737 95047813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95049926 95050003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95052888 95052930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95083114 95083174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95085173 95085261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95086728 95086868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95090278 95090356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95095636 95095724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95100889 95100946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95104653 95104712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95107655 95107845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95123264 95123320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95250134 95250160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGACCAGCAGCAGAGCGTGCGCCAGGTGTCTTCTGCAGAGGTGCGCATTGGGCCCATGAGACTGACAC
AGGACCCTATCCAGGTTCTGCTAATCTTCGCAAAGGAAGATAGCCAGAGTGATGGCTTCTGGTGGGCCTG
TGACAGAGCTGGCTACAGATGCAACATCGCTCGCACTCCAGAGTCGGCCCTCGAGTGCTTTCTGGACAAG
CATCATGAAATTATTGTGATCGATCACAGGCAGAGCCGGAACTTTGATGCAGAAGCCGTGTGCAGGTCAA
TCCGGGCCACGAACCCCTCTGAGCACACGGTGATCCTGGCTGTCGTTTCACAAGCATCTGATGACCATGA
AGAGGCCTCAGTCCTTCCTCTTCTTCATGCAGGCTTCAACCGGAGATTTATGGAGAACAGCAGCATAATT
GCTTGCTATAATGAACTGATTCAAATAGAACACGGGGAAGTTCGCTCACAGTTCAAATTACGGGCCTGTA
ATTCAGTGTTTACAGCGTTAGACCACTGTCACGAAGCCATAGAAATAACAAGTGATGACCATGTGATTCA
GTATGTCAACCCTGCCTTTGAGAGGATGATGGGCTACCACAAAGGGGAGCTCCTGGGGAAGGAACTCGCT
GACCTACCTAAGAGTGACAAGAACCGGGCAGACCTCCTGGACACCATCAACACGTGCATCAAGAAGGGAA
AGGAGTGGCAGGGGGTTTACTATGCCAGACGGAAATCCGGGGACAGCATCCAACAGCACGTGAAGATCAC
CCCAGTGATTGGCCAAGGAGGGAAAATTAGGCACTTTGTCTCCCTCAAGAAGCTGTGCTGTACCACTGAC
AGTAACAAGCAGATTCACCGGATTCATCGTGACTCCGGGGACAACTCTCAGACAGAGCCTCATTCGTTCA
GACACAAGAGCAGGAGGAAAGAGTCCATTGATGTGAAATCAATATCTTCTCGGGGCAGTGATGCGCCAAG
CCTACAGAATCGCCGCTACCCCTCCATGGCCAGGATCCACTCCATGACCATTGAGGCTCCCATCACAAAG
GTTATAAATATAATCAATGCAGCTCAGGAGAACAGCCCAGTTACAGTAGCAGAGGCCTTGGACAGAGTCC
TAGAAATTTTACGGACCACAGAACTGTATTCCCCTCAGCTGGGAACCAAAGATGAGGATCCCCACACCAG
TGACCTTGTTGGGGGCCTGATGACTGATGGCTTGAGGAGACTGTCAGGGAACGAGTATGTGTTTACAAAG
AATGTGCACCACAGTCACAGTCACCTCTCGATGCCCATCACCATCAATGATGTCCCCCCAAGTATCGCCC
AGCTCCTTGATAATGAGGAAAGCTGGGACTTCAACATCTTTGAATTGGAAGCCGTTACACATAAAAGGCC
ACTTGTGTACCTGGGCTTAAAGGTCTTCTCTCGGTTTGGAGTATGTGAATTTTTAAACTGTACTGAAACC
ACTCTTCGGGCCTGGCTGCAAGTGATTGAAGCCAACTACCACTCCTCCAACGCCTACCACAACTCCACCC
ATGCTGCCGATGTACTGCATGCCACGGCTTTCTTCCTTGGAAAGGAAAGAGTGAAGGGAAGCCTGGACCA
GCTGGATGAGGTGGCTGCTCTGATTGCTGCCACAGTCCACGACGTGGATCACCCCGGAAGGACCAACTCT
TTCCTGTGCAACGCCGGCAGCGAGCTCGCTGTGCTCTACAATGACACTGCAGTCTTGGAGAGTCACCACA
CAGCCCTGGCCTTCCAGCTCACAGTCAAGGACACCAAGTGCAACATTTTCAAGAATATTGACAGGAACCA
CTATCGAACGCTGCGCCAGGCTATTATCGACATGGTTTTGGCTACAGAGATGACAAAACACTTCGAGCAC
GTGAACAAATTCGTGAACAGCATCAACAAGCCACTGGCAGCTGAGAGTGAGGGCAGTGATTGTGAATGCA
ACCCTACCGGGAAGAACTTTCCTGAGAACCAAATCCTCATCAAACGCATGATGATTAAGTGTGCCGACGT
GGCCAACCCGTGCCGGCCCTTGGACCTGTGCATTGAATGGGCTGGAAGGATCTCCGAGGAGTACTTTGCT
CAGACTGATGAAGAGAAGAGGCAGGGGCTGCCTGTGGTGATGCCAGTGTTCGACCGCAATACCTGCAGCA
TCCCCAAGTCCCAGATCTCCTTCATCGACTACTTCATAACAGACATGTTTGATGCTTGGGATGCCTTCGC
TCACCTGCCTGCCCTGATGCAGCACCTGGCCGATAACTATAAACACTGGAAGACACTGGATGACCTCAAG
TGCAAAACTCTGAGACTTCCATCTGACAGCTGA

Translation (780 aa):
MDQQQSVRQVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPESALECFLDK
HHEIIVIDHRQSRNFDAEAVCRSIRATNPSEHTVILAVVSQASDDHEEASVLPLLHAGFNRRFMENSSII
ACYNELIQIEHGEVRSQFKLRACNSVFTALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELA
DLPKSDKNRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKITPVIGQGGKIRHFVSLKKLCCTTD
SNKQIHRIHRDSGDNSQTEPHSFRHKSRRKESIDVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITK
VINIINAAQENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGLRRLSGNEYVFTK
NVHHSHSHLSMPITINDVPPSIAQLLDNEESWDFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLNCTET
TLRAWLQVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNS
FLCNAGSELAVLYNDTAVLESHHTALAFQLTVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEH
VNKFVNSINKPLAAESEGSDCECNPTGKNFPENQILIKRMMIKCADVANPCRPLDLCIEWAGRISEEYFA
QTDEEKRQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFAHLPALMQHLADNYKHWKTLDDLK
CKTLRLPSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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