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Report for CCDS88182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88182.1 Public Mus musculus 11 Zmynd15 23 108 98 CCDS HistoryNCBI Gene:574428Re-query CCDS DB by CCDS ID:88182.1Re-query CCDS DB by GeneID:574428See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108563.8 ENSMUSP00000104203.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108563.8Link to Ensembl Protein Viewer:ENSMUSP00000104203.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108563Re-query CCDS DB by Protein ID:ENSMUSP00000104203
Original member Current member NCBI NM_001348337.1 NP_001335266.1 Accepted alive Link to Nucleotide Sequence:NM_001348337.1Link to Protein Sequence:NP_001335266.1Re-query CCDS DB by Nucleotide ID:NM_001348337Re-query CCDS DB by Protein ID:NP_001335266Link to BLAST:NP_001335266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335266.1 606 Q8C0R7-2 606 100% 0 0

Chromosomal Locations for CCDS 88182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70460957 70461140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70461787 70462021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70462111 70462266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70462523 70462683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70463439 70463591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70463916 70463996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464149 70464265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464356 70464444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464533 70464631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70464780 70464933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70465107 70465165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70465339 70465499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70465915 70466086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGAGAAGGTGGAACCACAGGAGGGTGGGGAGCCAGCCCCTCCAAGCAAGAGATTCCCCCAAGAAGCAA
AGCCTGCTCCAGAGTCAGAGGTGACCCAGCAGGAGGCAAGCCGAGAAGAAGGCAGCAGAGAGGAGCGACC
AGAGGATGAGAGGGCTCCTGAAAAGAGGAAAGGACAGAAGAATGAGGCTGCCCCCCTGCACCTTTCCTGC
CTTTTGCTGGTGACGGACGAGCATGGCACCATCTTGGGCATTGATCTGCTAATGGATGGAGCCCAGGGGA
GTGTAGGCCAGAACCCAGGCACTGAGAATCTGGCTCCTCGGGCCTATGCTCTCCTCTGTCATAGCATGGC
CTGCCCTATGGGCTCTGGGGACCCCCGCAAGCCCCGACAGCTTACCGTAGGAGACGCCCATCTCCATCGA
GAGCTAGAGAGCCTGGTCCCAAGGCTGGGTGTGAAGTTGGCAAAAACCCCAATGCGCACGTGGGGTCCTC
GGCCAGGTTTTACTTTTGCCTCCCTTCGGGCTCGAACCTGCCATGTTTGTCACAAGCACAGCTTTGAGGT
GAAGTTGACACCCTGCCCCCAGTGCAGTGCAGTCTTGTACTGTGGAGAGGCTTGTCTCCAGGCTGATTGG
CGGCGATGCCCAGATGACGTGAGCCACCGATTCTGGTGCCCAAGGCTCTCAGCGTTCATGGAGCGGGTCG
GAGAACTGGCAAGTTTGCCTTTCACCTATACTGCAGAAGTTACCAGTGAAACCTTTAACAAGGAAGCTTT
CCTGGCCTCCCGAGGCCTCACTCGTGGTTATTGGACCCAGCTCAGCATGCTGATTCCAGGGCCGGGTGCC
CCCAGGTACCCCTGGGGCAGCACATCATCCCTCAGCTGCCTTCTCAACGGTGATCCTTACCAGCTTCTGC
AGGGAGACGGGCCTGCCTTGATGCCTCCGGTGCCCCTCGAGCCACCCAGGAGCCTCTTTGGTTCATGGCA
GGATTACTACACGTGGCGGGGCCTCAGCCTGGACTCCCCCATGGCTGTGCTTCTCACCTACCCACTGACG
GTGTACTATGTCATCACCCACCTGGTACCCCAGTCCTTCCCTGAGCTCAACATCCAGAACAAGCAATCCC
TGAAGATCCACGTGGTGGAGGCTGGCAAGGAATTCGATCTCGTCATGGTGTTTTGGGAGCTCTTGGTCCT
TCTCCCCCATGTGGCCCTGGAGCTACAGTTTGTGGGTGACAGCCTGCCACCTGAGAGTGACCAGCAGCAT
TTTACTATGCAGAGGGATGGACCTGAGGTGTCTCTGCGTCCTGGTTCTGGAGTATCAGCACGGTTCAACT
CTGGGACTAAGGAGAAGGGAGGTCGAAGGGACCTGCAAATCAGGGTGTCTGCCAGGCCCTATCACCTGCT
CCAGGGACCCAAGCCTGACCTGGTTATTGGATTTAACTCCGGCTTTGGTCTCAAAGATACATGGCTGAGC
TCTCTACCCCGGTTACAGTCTCTCCGAGTGCCAGCATTCTTCACTGAGAGCAGTGAGTACGGCTGTGTGA
TGGACGATCAGACTATGGCGGTGGCCACCGGAGGGGGCACCAGCTCGCCACAGCCCAACCCCTTCCGCTC
CCCATTCCGCCTTAGAGCAGCTGACAACTGTATGCCCTGGTACTGCAACGCCTTCATCTTCCATTTGGTC
TACAAGCCTCCCCAAGGCGGCACAGTCCGCTCGGCTCCCGGCCCTGCACCTAGACCCCCAACTCCCGCTG
CACCTCCTGTCCCGGCTCGAAGGCGCCGAGGAGAAAAGAAAGCTGCACGCGGGCCCCGCCGGCGCAGATG
A

Translation (606 aa):
MEKVEPQEGGEPAPPSKRFPQEAKPAPESEVTQQEASREEGSREERPEDERAPEKRKGQKNEAAPLHLSC
LLLVTDEHGTILGIDLLMDGAQGSVGQNPGTENLAPRAYALLCHSMACPMGSGDPRKPRQLTVGDAHLHR
ELESLVPRLGVKLAKTPMRTWGPRPGFTFASLRARTCHVCHKHSFEVKLTPCPQCSAVLYCGEACLQADW
RRCPDDVSHRFWCPRLSAFMERVGELASLPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGA
PRYPWGSTSSLSCLLNGDPYQLLQGDGPALMPPVPLEPPRSLFGSWQDYYTWRGLSLDSPMAVLLTYPLT
VYYVITHLVPQSFPELNIQNKQSLKIHVVEAGKEFDLVMVFWELLVLLPHVALELQFVGDSLPPESDQQH
FTMQRDGPEVSLRPGSGVSARFNSGTKEKGGRRDLQIRVSARPYHLLQGPKPDLVIGFNSGFGLKDTWLS
SLPRLQSLRVPAFFTESSEYGCVMDDQTMAVATGGGTSSPQPNPFRSPFRLRAADNCMPWYCNAFIFHLV
YKPPQGGTVRSAPGPAPRPPTPAAPPVPARRRRGEKKAARGPRRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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