NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39974.1 Public Mus musculus 7 Snrpn 23 108 98 CCDS HistoryNCBI Gene:20646Re-query CCDS DB by CCDS ID:39974.1Re-query CCDS DB by GeneID:20646See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059305.16 ENSMUSP00000055941.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059305.16Link to Ensembl Protein Viewer:ENSMUSP00000055941.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000059305Re-query CCDS DB by Protein ID:ENSMUSP00000055941
Original member Current member EBI ENSMUST00000098402.4 ENSMUSP00000096003.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098402.4Link to Ensembl Protein Viewer:ENSMUSP00000096003.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098402Re-query CCDS DB by Protein ID:ENSMUSP00000096003
Original member Current member NCBI NM_001082961.2 NP_001076430.1 Accepted alive Link to Nucleotide Sequence:NM_001082961.2Link to Protein Sequence:NP_001076430.1Re-query CCDS DB by Nucleotide ID:NM_001082961Re-query CCDS DB by Protein ID:NP_001076430Link to BLAST:NP_001076430.1
Original member Current member NCBI NM_001082962.2 NP_001076431.1 Accepted alive Link to Nucleotide Sequence:NM_001082962.2Link to Protein Sequence:NP_001076431.1Re-query CCDS DB by Nucleotide ID:NM_001082962Re-query CCDS DB by Protein ID:NP_001076431Link to BLAST:NP_001076431.1
Original member Current member NCBI NM_001349690.1 NP_001336619.1 Accepted alive Link to Nucleotide Sequence:NM_001349690.1Link to Protein Sequence:NP_001336619.1Re-query CCDS DB by Nucleotide ID:NM_001349690Re-query CCDS DB by Protein ID:NP_001336619Link to BLAST:NP_001336619.1
Original member Current member NCBI NM_001349691.1 NP_001336620.1 Accepted alive Link to Nucleotide Sequence:NM_001349691.1Link to Protein Sequence:NP_001336620.1Re-query CCDS DB by Nucleotide ID:NM_001349691Re-query CCDS DB by Protein ID:NP_001336620Link to BLAST:NP_001336620.1
Original member Current member NCBI NM_001349692.1 NP_001336621.1 Accepted alive Link to Nucleotide Sequence:NM_001349692.1Link to Protein Sequence:NP_001336621.1Re-query CCDS DB by Nucleotide ID:NM_001349692Re-query CCDS DB by Protein ID:NP_001336621Link to BLAST:NP_001336621.1
Original member Current member NCBI NM_001349693.1 NP_001336622.1 Accepted alive Link to Nucleotide Sequence:NM_001349693.1Link to Protein Sequence:NP_001336622.1Re-query CCDS DB by Nucleotide ID:NM_001349693Re-query CCDS DB by Protein ID:NP_001336622Link to BLAST:NP_001336622.1
Original member Current member NCBI NM_001349694.1 NP_001336623.1 Accepted alive Link to Nucleotide Sequence:NM_001349694.1Link to Protein Sequence:NP_001336623.1Re-query CCDS DB by Nucleotide ID:NM_001349694Re-query CCDS DB by Protein ID:NP_001336623Link to BLAST:NP_001336623.1
Original member Current member NCBI NM_001349695.1 NP_001336624.1 Accepted alive Link to Nucleotide Sequence:NM_001349695.1Link to Protein Sequence:NP_001336624.1Re-query CCDS DB by Nucleotide ID:NM_001349695Re-query CCDS DB by Protein ID:NP_001336624Link to BLAST:NP_001336624.1
Original member Current member NCBI NM_013670.4 NP_038698.1 Accepted alive Link to Nucleotide Sequence:NM_013670.4Link to Protein Sequence:NP_038698.1Re-query CCDS DB by Nucleotide ID:NM_013670Re-query CCDS DB by Protein ID:NP_038698Link to BLAST:NP_038698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076430.1 240 P63163 240 100% 0 0
NP_001076431.1 240 P63163 240 100% 0 0
NP_001336619.1 240 P63163 240 100% 0 0
NP_001336620.1 240 P63163 240 100% 0 0
NP_001336621.1 240 P63163 240 100% 0 0
NP_001336622.1 240 P63163 240 100% 0 0
NP_001336623.1 240 P63163 240 100% 0 0
NP_001336624.1 240 P63163 240 100% 0 0
NP_038698.1 240 P63163 240 100% 0 0

Chromosomal Locations for CCDS 39974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 59983240 59983277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 59983369 59983494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 59985025 59985163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 59985831 59985983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 59986772 59986883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 59987412 59987563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 59988602 59988604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGACTGTGGGTAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGGATGAGATGTATCCTGCAAGATG
GGAGAATCTTCATTGGCACCTTCAAGGCTTTTGACAAGCATATGAATTTGATCCTCTGTGATTGTGATGA
GTTCAGGAAGATCAAGCCAAAGAATGCAAAACAGCCAGAACGTGAAGAAAAACGGGTTTTGGGTCTGGTC
TTGCTACGTGGGGAGAACTTGGTTTCAATGACTGTGGAGGGCCCACCTCCTAAAGATACTGGCATTGCTC
GTGTGCCTCTTGCTGGCGCTGCAGGTGGCCCTGGGGTTGGAAGAGCAGCTGGCAGAGGAGTGCCAGCAGG
TGTACCTATTCCCCAGGCTCCTGCTGGATTAGCAGGCCCTGTCAGAGGAGTTGGAGGCCCATCCCAGCAG
GTCATGACCCCACAGGGAAGAGGCACTGTTGCAGCTGCTGCTGTTGCTGCTACTGCTAGCATTGCAGGAG
CCCCAACCCAGTACCCGCCAGGACGGGGAACTCCACCTCCACCTGTAGGCAGAGCAACCCCACCTCCAGG
CATTATGGCTCCTCCACCTGGTATGAGACCACCCATGGGCCCACCCATTGGGCTTCCCCCTGCTCGTGGG
ACACCTATAGGCATGCCTCCTCCAGGAATGAGACCCCCTCCACCAGGAATTAGAGGCCCACCTCCCCCAG
GAATGCGCCCACCAAGACCCTAA

Translation (240 aa):
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV
LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ
VMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARG
TPIGMPPPGMRPPPPGIRGPPPPGMRPPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH