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Report for CCDS39368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39368.1 Public Mus musculus 5 Spdye4a 23 108 98 CCDS HistoryNCBI Gene:74673Re-query CCDS DB by CCDS ID:39368.1Re-query CCDS DB by GeneID:74673See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085733.8 ENSMUSP00000082882.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085733.8Link to Ensembl Protein Viewer:ENSMUSP00000082882.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085733Re-query CCDS DB by Protein ID:ENSMUSP00000082882
Original member Current member NCBI NM_029048.3 NP_083324.3 Accepted alive Link to Nucleotide Sequence:NM_029048.3Link to Protein Sequence:NP_083324.3Re-query CCDS DB by Nucleotide ID:NM_029048Re-query CCDS DB by Protein ID:NP_083324Link to BLAST:NP_083324.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083324.3 268 Q5IBH6 268 100% 0 0

Chromosomal Locations for CCDS 39368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143218714 143218773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143218963 143219131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143221338 143221423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143221980 143222038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143224881 143225099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143225594 143225807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGGGGAAGGGACGCCAGGCGTGGATTCAGCCAGAGTCCAGGAGGAGGGCGGGAGAGATCAGAGTCTGG
GATTTGTGGAAGGGAGAATACAGGTTGGGAGAATCGTGACTGCTGGCCAACTGTCATTGTGTTCTGAGGA
ACAGAGCCCTCAGCCTGGCATCACCAGGCCCTCACCTGGGGTGGTGGTAGATGGGGAGAGCTCAGGACTG
GCAGAACCAAGGGTGGAAGCCACTCCCCAGCCTCCATCCAGCATCCAAAAGAGGAAGAGGGACGAGTCAT
TAGATTCTGAGGATGACCTGGCAGAGCTATTTGAACCTGATCCCCAGCCAGTGTGGTCAGTGGAGATGCT
GTGCGGACTTAGGATGAGGCTGAAGAGGCGACGTGTGTCTACAGTGAGGCCTGAACACCACAAGGTCTTC
ACCAAGCTGCTCGAGGATCCTGTGGTGAAAAAATTCCTGACCTGGGACAAGATGCTGAGGGTGTCAGACA
AGTACCTCCTGTCTATGGTCATAGCTTATTTCAGCCGCGCTGGGCTCTTCTCCTGGCAGTACAGGCCCAT
CCACTTCTTCCTGGCTCTCTACCTGGCCAATGACATGGAGGAGGACAACCAGGCCCCTAAGCAAGACATT
TTTTACTTCCTCTATGGGAAGAGCTATGCCCAGCGCCCCATGTTCCACAAACTGCGCTTTCAGTTCATTC
GGTCCATGGGCTGGAAGATCTGGGTGTCCCGGGAGGAGTGTGAAGAGATCCAGGCTTACAATCCAGACCT
TTGGGTGTGGGCACGAGATCGCACCAACCTGACCTAG

Translation (268 aa):
MGEGTPGVDSARVQEEGGRDQSLGFVEGRIQVGRIVTAGQLSLCSEEQSPQPGITRPSPGVVVDGESSGL
AEPRVEATPQPPSSIQKRKRDESLDSEDDLAELFEPDPQPVWSVEMLCGLRMRLKRRRVSTVRPEHHKVF
TKLLEDPVVKKFLTWDKMLRVSDKYLLSMVIAYFSRAGLFSWQYRPIHFFLALYLANDMEEDNQAPKQDI
FYFLYGKSYAQRPMFHKLRFQFIRSMGWKIWVSREECEEIQAYNPDLWVWARDRTNLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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