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Report for CCDS82338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82338.1 Public Homo sapiens 19 ZNF875 24 110 108 CCDS HistoryNCBI Gene:284459Re-query CCDS DB by CCDS ID:82338.1Re-query CCDS DB by GeneID:284459See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392153.8 ENSP00000375994.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392153.8Link to Ensembl Protein Viewer:ENSP00000375994.3Re-query CCDS DB by Nucleotide ID:ENST00000392153Re-query CCDS DB by Protein ID:ENSP00000375994
Original member Current member NCBI NM_001329763.2 NP_001316692.1 Accepted alive Link to Nucleotide Sequence:NM_001329763.2Link to Protein Sequence:NP_001316692.1Re-query CCDS DB by Nucleotide ID:NM_001329763Re-query CCDS DB by Protein ID:NP_001316692Link to BLAST:NP_001316692.1
Original member Current member NCBI NM_001329764.2 NP_001316693.1 Accepted alive Link to Nucleotide Sequence:NM_001329764.2Link to Protein Sequence:NP_001316693.1Re-query CCDS DB by Nucleotide ID:NM_001329764Re-query CCDS DB by Protein ID:NP_001316693Link to BLAST:NP_001316693.1
Original member Current member NCBI NM_001353803.2 NP_001340732.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353803.2Link to Protein Sequence:NP_001340732.1Re-query CCDS DB by Nucleotide ID:NM_001353803Re-query CCDS DB by Protein ID:NP_001340732Link to BLAST:NP_001340732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316692.1 640 P10072-2 640 100% 0 0
NP_001316693.1 640 P10072-2 640 100% 0 0
NP_001340732.1 640 P10072-2 640 100% 0 0

Chromosomal Locations for CCDS 82338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37335225 37335257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37347190 37347316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37347777 37347872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37362109 37363775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGCCACAGGGCTCCTGAGAGCCAAAAAAGAGGCGTTCGTGGCATTCAGGGATGTGGCTGTGTACTTCA
CCCAGGAGGAGTGGAGGTTGTTGAGCCCTGCTCAGAGGACCCTGCACAGGGAGGTGATGCTGGAGACTTA
TAACCATCTGGTCTCACTGGAAATTCCATCTTCTAAACCAAAACTCATTGCTCAGCTGGAGCGAGGGGAA
GCGCCCTGGAGAGAGGAGAGAAAATGTCCACTGGACCTCTGTCCAGAATCGAAGCCAGAAATTCAACTTA
GTCCCTCCTGCCCTCTGATTTTCTCCAGTCAGCAAGCTCTCAGCCAACATGTGTGGCTGAGTCATCTCTC
TCAGCTGTTTTCAAGTTTATGGGCAGGAAATCCTCTCCACCTGGGAAAACACTATCCAGAAGATCAGAAA
CAACAGCAGGATCCATTCTGCTTTAGTGGCAAAGCAGAATGGATTCAAGAGGGAGAAGACTCCAGACTCC
TGTTTGGGAGAGTAAGCAAAAATGGCACTTCAAAGGCACTTTCCAGCCCACCTGAAGAACAACAGCCAGC
ACAGTCCAAGGAAGACAACACAGTGGTGGATATAGGGTCCAGCCCTGAACGGAGGGCAGATCTAGAGGAA
ACAGACAAAGTATTGCATGGTTTAGAAGTCTCAGGATTTGGAGAAATCAAATATGAAGAGTTTGGGCCAG
GCTTTATCAAGGAGTCAAACCTCCTTAGCCTCCAGAAGACACAAACTGGGGAGACACCTTACATGTACAC
TGAGTGGGGAGACAGCTTTGGCAGTATGTCAGTCCTCATCAAAAACCCAAGGACACACTCTGGGGGAAAG
CCTTATGTGTGCAGGGAATGTGGGCGAGGCTTTACGTGGAAGTCAAACCTGATCACACATCAGAGGACAC
ACTCAGGGGAGAAACCTTATGTGTGCAAGGATTGTGGACGAGGCTTTACTTGGAAGTCGAACCTCTTTAC
ACATCAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGAATGTGGGCAGAGCTTTAGCCTGAAG
TCAAACCTCATTACCCACCAGAGGGCGCACACTGGGGAGAAGCCTTATGTTTGCAGGGAATGTGGGCGTG
GCTTTCGCCAGCATTCACACCTGGTCAGACACAAGAGGACACATTCAGGAGAGAAGCCTTACATTTGCAG
GGAGTGTGAGCAAGGCTTTAGCCAGAAGTCACACCTCATCAGACACTTAAGGACACACACAGGAGAGAAG
CCTTATGTATGCACAGAATGTGGGCGTCACTTTAGCTGGAAATCAAACCTCAAAACACACCAGAGGACAC
ACTCAGGGGTTAAACCTTATGTCTGCCTGGAGTGCGGGCAGTGCTTTAGCCTGAAGTCAAACCTTAACAA
ACACCAGAGGTCACACACGGGGGAGAAGCCATTTGTATGTACGGAGTGTGGGCGAGGCTTTACCCGGAAA
TCAACCCTGAGCACGCACCAGAGGACACACTCAGGGGAGAAGCCATTTGTATGTGCTGAGTGTGGACGAG
GCTTTAATGATAAGTCCACCCTCATTTCACACCAGAGGACACATTCAGGGGAAAAGCCTTTTATGTGCAG
GGAGTGTGGCAGAAGGTTTCGGCAGAAGCCTAACCTGTTTAGGCACAAGAGGGCACACTCAGGTGCCTTT
GTGTGCAGGGAGTGTGGGCAAGGCTTTTGTGCTAAGTTAACTCTCATTAAACACCAGAGAGCACACGCAG
GGGGGAAGCCTCATGTGTGCAGGGAGTGTGGGCAAGGCTTTAGCCGGCAGTCACACCTCATTAGACACCA
GAGGACACATTCAGGAGAGAAGCCTTATATTTGCAGAAAGTGTGGACGGGGCTTTAGTCGGAAGTCCAAC
CTTATCAGACATCAGAGGACACACTCAGGATAG

Translation (640 aa):
MATGLLRAKKEAFVAFRDVAVYFTQEEWRLLSPAQRTLHREVMLETYNHLVSLEIPSSKPKLIAQLERGE
APWREERKCPLDLCPESKPEIQLSPSCPLIFSSQQALSQHVWLSHLSQLFSSLWAGNPLHLGKHYPEDQK
QQQDPFCFSGKAEWIQEGEDSRLLFGRVSKNGTSKALSSPPEEQQPAQSKEDNTVVDIGSSPERRADLEE
TDKVLHGLEVSGFGEIKYEEFGPGFIKESNLLSLQKTQTGETPYMYTEWGDSFGSMSVLIKNPRTHSGGK
PYVCRECGRGFTWKSNLITHQRTHSGEKPYVCKDCGRGFTWKSNLFTHQRTHSGLKPYVCKECGQSFSLK
SNLITHQRAHTGEKPYVCRECGRGFRQHSHLVRHKRTHSGEKPYICRECEQGFSQKSHLIRHLRTHTGEK
PYVCTECGRHFSWKSNLKTHQRTHSGVKPYVCLECGQCFSLKSNLNKHQRSHTGEKPFVCTECGRGFTRK
STLSTHQRTHSGEKPFVCAECGRGFNDKSTLISHQRTHSGEKPFMCRECGRRFRQKPNLFRHKRAHSGAF
VCRECGQGFCAKLTLIKHQRAHAGGKPHVCRECGQGFSRQSHLIRHQRTHSGEKPYICRKCGRGFSRKSN
LIRHQRTHSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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