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Report for CCDS19403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19403.1 Public Mus musculus 5 Rufy3 23 108 98 CCDS HistoryNCBI Gene:52822Re-query CCDS DB by CCDS ID:19403.1Re-query CCDS DB by GeneID:52822See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031229.10 ENSMUSP00000031229.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031229.10Link to Ensembl Protein Viewer:ENSMUSP00000031229.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031229Re-query CCDS DB by Protein ID:ENSMUSP00000031229
Original member Current member NCBI NM_001359208.1 NP_001346137.1 Accepted alive Link to Nucleotide Sequence:NM_001359208.1Link to Protein Sequence:NP_001346137.1Re-query CCDS DB by Nucleotide ID:NM_001359208Re-query CCDS DB by Protein ID:NP_001346137Link to BLAST:NP_001346137.1
Original member Current member NCBI NM_027530.3 NP_081806.1 Accepted alive Link to Nucleotide Sequence:NM_027530.3Link to Protein Sequence:NP_081806.1Re-query CCDS DB by Nucleotide ID:NM_027530Re-query CCDS DB by Protein ID:NP_081806Link to BLAST:NP_081806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346137.1 469 Q9D394-1 469 100% 0 0
NP_081806.1 469 Q9D394-1 469 100% 0 0

Chromosomal Locations for CCDS 19403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88584140 88584317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88614941 88615114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88616462 88616579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88617335 88617436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88621301 88621424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88627221 88627282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88628025 88628090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88630537 88630606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88632439 88632531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88635192 88635275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88637192 88637359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88638981 88639078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88640589 88640661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGTCTGCCCTGACGCCTCCGACTGATATGCCAACCCCCACCACTGACAAGATCACACAGGCTGCCATGG
AG
ACCATCTACCTTTGCAAATTCCGAGTGTCTATGGACGGAGAATGGCTCTGCCTTCGGGAGCTGGATGA
C
ATCTCCCTTACACCCGACCCAGAGCCGACCCATGAAGATCCCAATTATCTCATGGCTAACGAACGCATG
AAC
CTGATGAACATGGCAAAGCTGAGCATCAAGGGCTTGATTGAATCGGCTCTGAATCTGGGGCGGACCC
TG
GACTCTGACTACGCACCTCTCCAGCAGTTTTTCGTGGTGATGGAACACTGCCTGAAACACGGCTTGAA
A
GCCAAGAAAACTTTTCTTGGACAAAATAAATCCTTCTGGGGGCCTCTAGAGCTGGTGGAGAAGCTTGTT
CCA
GAAGCTGCAGAAATAACAGCGAGTGTAAAAGACCTCCCAGGACTCAAGACACCAGTTGGCAGAGGAA
GA
GCCTGGCTTCGGTTGGCATTGATGCAAAAGAAGCTTTCTGAGTATATGAAAGCCTTGATCAATAAGAA
G
GAACTTCTCAGTGAGTTCTATGAAGTCAATGCCCTCATGATGGAAGAAGAAGGAGCTATTATCGCTGGT
CTC
CTGGTGGGTCTGAATGTCATCGATGCCAATTTCTGCATGAAAGGAGAAGACCTGGACTCTCAGGTTG
GA
GTTATAGATTTTTCGATGTATCTCAAAGATGGAAACAGTAGTAAAGGTAGTGAAGGGGATGGACAGAT
T
ACTGCGATCCTAGACCAGAAGAACTATGTAGAAGAACTCAACAGACATCTGAATGCAACTGTAAACAAC
CTT
CAGACAAAAGTAGATCTGTTAGAAAAATCCAACACTAAATTGACAGAAGAACTTGCCGTTGCCAACA
AC
AGAATTATTACCTTACAAGAAGAAATGGAACGAGTTAAAGAAGAAAGCTCCTATCTACTGGAATCCAA
T
CGGAAGGGTCCTAAACAAGACAGAACTGCAGAAGGGCAAGCGCTGAGCGAAGCCAGAAAGCATCTAAAG
GAG
GAGACACAGTTAAGATTGGATGTCGAGAAGGAGCTGGAGCTGCAGATCAGCATGAGGCAGGAGATGG
AA
CTGGCTATGAAGATGCTGGAGAAGGATGTCTGTGAGAAGCAGGATGCCCTGGTGTCTCTGCGGCAGCA
G
CTGGACGATCTCCGGGCTCTTAAGCATGAGCTCGCCTTTAAACTGCAGAGTTCAGACCTAGGAGTGAAA
CAG
AAAAGTGAATTAAACAGTCGCTTGGAAGAAAAGACCAATCAGATGGCTGCCACCATTAAACAGCTGG
AG
CAAAGTGAAAAAGATTTGGTGAAACAGGCAAAGACCTTAAATAGTGCAGCAAATAAACTGATCCCAAA
G
CACCATTAA


Translation (469 aa):
MSALTPPTDMPTPTTDKITQAAMETIYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERM
N
LMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLK
AKKTFLGQNKSFWGPLELVEKLV
P
EAAEITASVKDLPGL
KTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEVNALMMEEEGAIIAG
L
LVGLNVIDANFCMKGEDLDSQ
VGVIDFSMYLKDGNSSKGSEGDGQITAILDQKNYVEELNRHLNATVNN
L
QTKVDLLEKSNTKLTEE
LAVANNRIITLQEEMERVKEESSYLLESNRKGPKQDRTAEGQALSEARKHLK
E
ETQLRL
DVEKELELQISMRQEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVK
Q
KSELNSRLEEKTNQMAATIKQLEQ
SEKDLVKQAKTLNSAANKLIPKHH



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser