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Report for CCDS25583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25583.1 Public Mus musculus 11 Prkar1a 23 108 98 CCDS HistoryNCBI Gene:19084Re-query CCDS DB by CCDS ID:25583.1Re-query CCDS DB by GeneID:19084See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049527.6 ENSMUSP00000056500.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049527.6Link to Ensembl Protein Viewer:ENSMUSP00000056500.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049527Re-query CCDS DB by Protein ID:ENSMUSP00000056500
Original member Current member EBI ENSMUST00000106677.7 ENSMUSP00000102288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106677.7Link to Ensembl Protein Viewer:ENSMUSP00000102288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106677Re-query CCDS DB by Protein ID:ENSMUSP00000102288
Original member Current member NCBI NM_001313973.2 NP_001300902.1 Accepted alive Link to Nucleotide Sequence:NM_001313973.2Link to Protein Sequence:NP_001300902.1Re-query CCDS DB by Nucleotide ID:NM_001313973Re-query CCDS DB by Protein ID:NP_001300902Link to BLAST:NP_001300902.1
Original member Current member NCBI NM_001313974.2 NP_001300903.1 Accepted alive Link to Nucleotide Sequence:NM_001313974.2Link to Protein Sequence:NP_001300903.1Re-query CCDS DB by Nucleotide ID:NM_001313974Re-query CCDS DB by Protein ID:NP_001300903Link to BLAST:NP_001300903.1
Original member Current member NCBI NM_001313975.2 NP_001300904.1 Accepted alive Link to Nucleotide Sequence:NM_001313975.2Link to Protein Sequence:NP_001300904.1Re-query CCDS DB by Nucleotide ID:NM_001313975Re-query CCDS DB by Protein ID:NP_001300904Link to BLAST:NP_001300904.1
Original member Current member NCBI NM_001313976.2 NP_001300905.1 Accepted alive Link to Nucleotide Sequence:NM_001313976.2Link to Protein Sequence:NP_001300905.1Re-query CCDS DB by Nucleotide ID:NM_001313976Re-query CCDS DB by Protein ID:NP_001300905Link to BLAST:NP_001300905.1
Original member Current member NCBI NM_001362677.1 NP_001349606.1 Accepted alive Link to Nucleotide Sequence:NM_001362677.1Link to Protein Sequence:NP_001349606.1Re-query CCDS DB by Nucleotide ID:NM_001362677Re-query CCDS DB by Protein ID:NP_001349606Link to BLAST:NP_001349606.1
Original member Current member NCBI NM_021880.4 NP_068680.1 Accepted alive Link to Nucleotide Sequence:NM_021880.4Link to Protein Sequence:NP_068680.1Re-query CCDS DB by Nucleotide ID:NM_021880Re-query CCDS DB by Protein ID:NP_068680Link to BLAST:NP_068680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300902.1 381 Q9DBC7 381 100% 0 0
NP_001300903.1 381 Q9DBC7 381 100% 0 0
NP_001300904.1 381 Q9DBC7 381 100% 0 0
NP_001300905.1 381 Q9DBC7 381 100% 0 0
NP_001349606.1 381 Q9DBC7 381 100% 0 0
NP_068680.1 381 Q9DBC7 381 100% 0 0

Chromosomal Locations for CCDS 25583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109653785 109653961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109659999 109660169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109661035 109661126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109661288 109661349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109662276 109662322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109662949 109663107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109664759 109664819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109665865 109665986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109666644 109666725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109667430 109667602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCGTCTGGCAGTATGGCAACCAGTGAGGAAGAGCGGAGTCTCCGGGAATGCGAGCTCTATGTGCAGA
AGCACAATATCCAGGCCCTGCTGAAGGACTCCATCGTGCAGCTGTGCACTACGCGGCCCGAGAGGCCCAT
GGCATTCCTTCGGGAATACTTTGAGAGGTTGGAGAAGGAGGAGGCAAGACAGATTCAGTGTCTACAGAAA
ACCGGCATCCGTACTGACTCGAGGGAGGACGAGATCTCTCCTCCACCCCCCAATCCAGTGGTGAAGGGCC
GACGGCGCCGAGGTGCTATCAGTGCTGAAGTTTACACTGAGGAGGATGCTGCCTCCTACGTTAGAAAGGT
TATTCCAAAAGATTATAAGACAATGGCTGCTTTAGCCAAGGCCATCGAAAAGAATGTGCTGTTTTCACAC
CTTGATGATAACGAGAGAAGTGACATTTTTGATGCTATGTTTCCAGTCTCCTTTATTGCTGGAGAGACGG
TTATTCAGCAAGGTGATGAAGGGGATAACTTCTATGTGATTGATCAAGGAGAAATGGATGTCTATGTCAA
TAATGAATGGGCAACCAGTGTTGGGGAAGGAGGGAGCTTTGGAGAGCTGGCTTTGATTTATGGAACACCC
AGAGCAGCCACTGTCAAAGCAAAGACAAACGTGAAACTGTGGGGCATCGACCGAGACAGCTACCGAAGAA
TCCTCATGGGAAGCACTCTGCGAAAGAGGAAGATGTATGAAGAATTCCTTAGTAAAGTGTCTATTTTAGA
GTCTCTGGACAAGTGGGAGCGTCTCACAGTAGCCGATGCATTGGAGCCTGTCCAGTTTGAAGATGGACAG
AAGATCGTGGTGCAAGGAGAGCCGGGGGATGAGTTCTTCATCATTTTAGAGGGCACAGCTGCTGTGCTGC
AGCGTCGGTCAGAAAACGAAGAATTTGTTGAAGTGGGACGACTGGGGCCTTCTGATTATTTTGGTGAAAT
TGCCCTGCTGATGAATCGTCCTCGGGCTGCCACTGTGGTTGCCCGGGGCCCTTTGAAGTGCGTTAAGTTG
GACCGGCCTCGGTTTGAACGCGTCCTTGGCCCGTGCTCAGACATCCTCAAGCGGAACATCCAGCAGTACA
ACAGCTTCGTGTCCCTGTCCGTCTGA

Translation (381 aa):
MASGSMATSEEERSLRECELYVQKHNIQALLKDSIVQLCTTRPERPMAFLREYFERLEKEEARQIQCLQK
TGIRTDSREDEISPPPPNPVVKGRRRRGAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSH
LDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTP
RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQ
KIVVQGEPGDEFFIILEGTAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKL
DRPRFERVLGPCSDILKRNIQQYNSFVSLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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