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Report for CCDS12842.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12842.2 Public Homo sapiens 19 ZNF577 24 110 108 CCDS HistoryNCBI Gene:84765Re-query CCDS DB by CCDS ID:12842.2Re-query CCDS DB by GeneID:84765See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12842.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12842.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301399.12 ENSP00000301399.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301399.12Link to Ensembl Protein Viewer:ENSP00000301399.5Re-query CCDS DB by Nucleotide ID:ENST00000301399Re-query CCDS DB by Protein ID:ENSP00000301399
Original member Current member EBI ENST00000638348.2 ENSP00000491936.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000638348.2Link to Ensembl Protein Viewer:ENSP00000491936.2Re-query CCDS DB by Nucleotide ID:ENST00000638348Re-query CCDS DB by Protein ID:ENSP00000491936
Original member Current member NCBI NM_001370447.1 NP_001357376.1 Accepted alive Link to Nucleotide Sequence:NM_001370447.1Link to Protein Sequence:NP_001357376.1Re-query CCDS DB by Nucleotide ID:NM_001370447Re-query CCDS DB by Protein ID:NP_001357376Link to BLAST:NP_001357376.1
Original member Current member NCBI NM_001370448.1 NP_001357377.1 Accepted alive Link to Nucleotide Sequence:NM_001370448.1Link to Protein Sequence:NP_001357377.1Re-query CCDS DB by Nucleotide ID:NM_001370448Re-query CCDS DB by Protein ID:NP_001357377Link to BLAST:NP_001357377.1
Original member Current member NCBI NM_001370449.1 NP_001357378.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370449.1Link to Protein Sequence:NP_001357378.1Re-query CCDS DB by Nucleotide ID:NM_001370449Re-query CCDS DB by Protein ID:NP_001357378Link to BLAST:NP_001357378.1
Original member Current member NCBI NM_032679.3 NP_116068.2 Accepted alive Link to Nucleotide Sequence:NM_032679.3Link to Protein Sequence:NP_116068.2Re-query CCDS DB by Nucleotide ID:NM_032679Re-query CCDS DB by Protein ID:NP_116068Link to BLAST:NP_116068.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357376.1 485 Q9BSK1-1 485 100% 0 0
NP_001357377.1 485 Q9BSK1-1 485 100% 0 0
NP_001357378.1 485 Q9BSK1-1 485 100% 0 0
NP_116068.2 485 Q9BSK1-1 485 100% 0 0

Chromosomal Locations for CCDS 12842.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51872532 51873706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51877282 51877377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51878389 51878515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51880323 51880382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGAAAAATGCCACGATTGTAATGTCTGTGAGGAGAGAGCAAGGCAGTTCTTCAGGGGAGGGGTCATTGT
CATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTT
GTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAGGGTATCGAGGCACCAAGCCAGAT
TCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTC
CAGGTTTTGTAATCCAGAGTAGAAGATATGCAGGAAAAGATTCTGATGCATTTGGTGGATATGGGAGATC
ATGCCTCCATATCAAGCGTGACAAAACTCTTACTGGAGTTAAATACCATAGATGTGTTAAACCCAGCAGC
CCTAAATCACAGCTCAATGACCTACAAAAAATTTGTGCAGGAGGGAAACCACATGAATGCAGTGTGTGCG
GGAGAGCCTTCTCCAGGAAAGCACAGCTTATTCAACATCAGAGAACTGAAAGAGGAGAGAAACCCCATGG
ATGTGGTGAATGTGGGAAAACATTCATGAGGAAGATTCAGCTCACTGAGCATCAGAGAACTCACACAGGA
GAGAAGCCCCATGAATGTAGTGAATGTGGAAAAGCCTTCTCCAGAAAGTCACAGCTCATGGTCCATCAGA
GAACCCATACAGGAGAGAAACCCTACAGATGCAGCAAATGCGGAAAAGCCTTCAGCCGGAAGTGCCGGCT
CAATAGACATCAGCGATCACATACTGGAGAGAAACTCTATGGGTGCAGTGTGTGTGGGAAAGCCTTTTCT
CAGAAGGCATACCTCACTGCACACCAGAGACTTCACACAGGAGATAAGCCTTATAAATGCAGTGATTGTG
GAAGAACCTTCTATTTTAAGTCAGACCTGACCAGACATCAGAGGATTCATACGGGAGAGAAACCTTATGA
ATGTAGTGAGTGTGAAAAAGCCTTTAGAAGCAAGTCGAAGCTCATTCAGCATCAGCGTACTCACACTGGA
GAGAGACCATATTCATGCAGAGAATGTGGCAAAGCCTTTGCCCACATGTCAGTCCTCATTAAACATGAGA
AAACTCACATAAGAGAGACAGCCATAAATTCACTGACGGTGGAGAAACCTTCCTCAAGGAGTCATACCTC
CTTATACATGAGCGAACTCATACAAGAGCAAAAGACTGTGAACACAGTACCTATAGAAATGCCTTCCTCA
GGAACCCCGCCATTGTTAAACAAGAGTGAGCGCCTAGTGGGCAGAAATGTAGTGATTGTGGAACAACCTT
TTCCAAGAAATCAAGCCTTTGTAGTTAATCAGGAATTTGAACAGAGAATAAGCCTCACAAATGAAGTGAA
TGTGGCCCCATCAGTAATAAATTATATCTTGTATCTTACAGATATTGTATCAGAATAA

Translation (485 aa):
MKNATIVMSVRREQGSSSGEGSLSFEDVAVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPD
SLFKLEQGEPPGIAEGAAHSQICPGFVIQSRRYAGKDSDAFGGYGRSCLHIKRDKTLTGVKYHRCVKPSS
PKSQLNDLQKICAGGKPHECSVCGRAFSRKAQLIQHQRTERGEKPHGCGECGKTFMRKIQLTEHQRTHTG
EKPHECSECGKAFSRKSQLMVHQRTHTGEKPYRCSKCGKAFSRKCRLNRHQRSHTGEKLYGCSVCGKAFS
QKAYLTAHQRLHTGDKPYKCSDCGRTFYFKSDLTRHQRIHTGEKPYECSECEKAFRSKSKLIQHQRTHTG
ERPYSCRECGKAFAHMSVLIKHEKTHIRETAINSLTVEKPSSRSHTSLYMSELIQEQKTVNTVPIEMPSS
GTPPLLNKSERLVGRNVVIVEQPFPRNQAFVVNQEFEQRISLTNEVNVAPSVINYILYLTDIVSE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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