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Report for CCDS40288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40288.1 Public Mus musculus 8 Defb15 23 108 98 CCDS HistoryNCBI Gene:246082Re-query CCDS DB by CCDS ID:40288.1Re-query CCDS DB by GeneID:246082See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062586.2 ENSMUSP00000059763.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062586.2Link to Ensembl Protein Viewer:ENSMUSP00000059763.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000062586Re-query CCDS DB by Protein ID:ENSMUSP00000059763
Original member Current member NCBI NM_139222.3 NP_631968.1 Accepted alive Link to Nucleotide Sequence:NM_139222.3Link to Protein Sequence:NP_631968.1Re-query CCDS DB by Nucleotide ID:NM_139222Re-query CCDS DB by Protein ID:NP_631968Link to BLAST:NP_631968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631968.1 79 Q8R2I5 79 100% 0 0

Chromosomal Locations for CCDS 40288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21929870 21930060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21932628 21932676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGAAGACATTCTTATTTCTCTTTGCTGTTCTCTTCTTTCTGGACCCAGCCAAGAATGCATTTTTTGATG
AG
AAATGCAGCAGGGTTAATGGGAGATGCACAGCATCTTGTCTGAAGAATGAAGAACTCGTTGCTCTCTG
C
CAGAAGAATCTGAAGTGCTGTGTGACAGTCCAGCCCTGTGGAAAGAGCAAGAGCAACCAGTCAGATGAA
GGC
TCAGGCCACATGGGGACTTGGGGATGA


Translation (79 aa):
MKTFLFLFAVLFFLDPAKNAFFDEKCSRVNGRCTASCLKNEELVALCQKNLKCCVTVQPCGKSKSNQSDE
G
SGHMGTWG




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser