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Report for CCDS31570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31570.1 Public Homo sapiens 11 MS4A1 24 110 108 CCDS HistoryNCBI Gene:931Re-query CCDS DB by CCDS ID:31570.1Re-query CCDS DB by GeneID:931See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345732.9 ENSP00000314620.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345732.9Link to Ensembl Protein Viewer:ENSP00000314620.7Re-query CCDS DB by Nucleotide ID:ENST00000345732Re-query CCDS DB by Protein ID:ENSP00000314620
Original member Current member EBI ENST00000389939.2 ENSP00000374589.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389939.2Link to Ensembl Protein Viewer:ENSP00000374589.2Re-query CCDS DB by Nucleotide ID:ENST00000389939Re-query CCDS DB by Protein ID:ENSP00000374589
Original member Current member EBI ENST00000534668.6 ENSP00000433277.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534668.6Link to Ensembl Protein Viewer:ENSP00000433277.1Re-query CCDS DB by Nucleotide ID:ENST00000534668Re-query CCDS DB by Protein ID:ENSP00000433277
Original member Current member EBI ENST00000674194.1 ENSP00000501369.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674194.1Link to Ensembl Protein Viewer:ENSP00000501369.1Re-query CCDS DB by Nucleotide ID:ENST00000674194Re-query CCDS DB by Protein ID:ENSP00000501369
Original member Current member NCBI NM_021950.4 NP_068769.2 Accepted alive Link to Nucleotide Sequence:NM_021950.4Link to Protein Sequence:NP_068769.2Re-query CCDS DB by Nucleotide ID:NM_021950Re-query CCDS DB by Protein ID:NP_068769Link to BLAST:NP_068769.2
Original member Current member NCBI NM_152866.3 NP_690605.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152866.3Link to Protein Sequence:NP_690605.1Re-query CCDS DB by Nucleotide ID:NM_152866Re-query CCDS DB by Protein ID:NP_690605Link to BLAST:NP_690605.1
Original member Current member NCBI NM_152867.2 NP_690606.1 Accepted alive Link to Nucleotide Sequence:NM_152867.2Link to Protein Sequence:NP_690606.1Re-query CCDS DB by Nucleotide ID:NM_152867Re-query CCDS DB by Protein ID:NP_690606Link to BLAST:NP_690606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068769.2 297 P11836-1 297 100% 0 0
NP_690605.1 297 P11836-1 297 100% 0 0
NP_690606.1 297 P11836-1 297 100% 0 0

Chromosomal Locations for CCDS 31570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60462375 60462533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60463002 60463121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60464288 60464344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60465921 60466157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60466959 60467060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60468250 60468468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGACAACACCCAGAAATTCAGTAAATGGGACTTTCCCGGCAGAGCCAATGAAAGGCCCTATTGCTATGC
AATCTGGTCCAAAACCACTCTTCAGGAGGATGTCTTCACTGGTGGGCCCCACGCAAAGCTTCTTCATGAG
GGAATCTAAGACTTTGGGGGCTGTCCAGATTATGAATGGGCTCTTCCACATTGCCCTGGGGGGTCTTCTG
ATGATCCCAGCAGGGATCTATGCACCCATCTGTGTGACTGTGTGGTACCCTCTCTGGGGAGGCATTATGT
ATATTATTTCCGGATCACTCCTGGCAGCAACGGAGAAAAACTCCAGGAAGTGTTTGGTCAAAGGAAAAAT
GATAATGAATTCATTGAGCCTCTTTGCTGCCATTTCTGGAATGATTCTTTCAATCATGGACATACTTAAT
ATTAAAATTTCCCATTTTTTAAAAATGGAGAGTCTGAATTTTATTAGAGCTCACACACCATATATTAACA
TATACAACTGTGAACCAGCTAATCCCTCTGAGAAAAACTCCCCATCTACCCAATACTGTTACAGCATACA
ATCTCTGTTCTTGGGCATTTTGTCAGTGATGCTGATCTTTGCCTTCTTCCAGGAACTTGTAATAGCTGGC
ATCGTTGAGAATGAATGGAAAAGAACGTGCTCCAGACCCAAATCTAACATAGTTCTCCTGTCAGCAGAAG
AAAAAAAAGAACAGACTATTGAAATAAAAGAAGAAGTGGTTGGGCTAACTGAAACATCTTCCCAACCAAA
GAATGAAGAAGACATTGAAATTATTCCAATCCAAGAAGAGGAAGAAGAAGAAACAGAGACGAACTTTCCA
GAACCTCCCCAAGATCAGGAATCCTCACCAATAGAAAATGACAGCTCTCCTTAA

Translation (297 aa):
MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNGLFHIALGGLL
MIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLSLFAAISGMILSIMDILN
IKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAG
IVENEWKRTCSRPKSNIVLLSAEEKKEQTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFP
EPPQDQESSPIENDSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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