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Report for CCDS40697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40697.1 Public Mus musculus 9 Cilk1 23 108 98 CCDS HistoryNCBI Gene:56542Re-query CCDS DB by CCDS ID:40697.1Re-query CCDS DB by GeneID:56542See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044551.7 ENSMUSP00000048234.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044551.7Link to Ensembl Protein Viewer:ENSMUSP00000048234.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044551Re-query CCDS DB by Protein ID:ENSMUSP00000048234
Original member Current member EBI ENSMUST00000118869.7 ENSMUSP00000112961.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118869.7Link to Ensembl Protein Viewer:ENSMUSP00000112961.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118869Re-query CCDS DB by Protein ID:ENSMUSP00000112961
Original member Current member NCBI NM_001163780.1 NP_001157252.1 Accepted alive Link to Nucleotide Sequence:NM_001163780.1Link to Protein Sequence:NP_001157252.1Re-query CCDS DB by Nucleotide ID:NM_001163780Re-query CCDS DB by Protein ID:NP_001157252Link to BLAST:NP_001157252.1
Original member Current member NCBI NM_019987.2 NP_064371.2 Accepted alive Link to Nucleotide Sequence:NM_019987.2Link to Protein Sequence:NP_064371.2Re-query CCDS DB by Nucleotide ID:NM_019987Re-query CCDS DB by Protein ID:NP_064371Link to BLAST:NP_064371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157252.1 629 Q9JKV2 629 100% 0 0
NP_064371.2 629 Q9JKV2 629 100% 0 0

Chromosomal Locations for CCDS 40697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 78131471 78131571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78135596 78135650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78139976 78140097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78141194 78141273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78150529 78150661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78153565 78153736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78155349 78155516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78157641 78157952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78160369 78160559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78160663 78160811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78164531 78164659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78166910 78167032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78167600 78167754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGAATAGATACACAACGATCAAGCAGCTTGGGGATGGGACCTACGGCTCTGTCCTGCTGGGGAGAAGCA
TTGAGTCTGGAGAACTGATTGCCATTAAAAAAATGAAAAGAAAGTTTTACTCCTGGGAAGAATGCATGAA
CCTTCGGGAGGTTAAGTCTTTAAAGAAGCTTAATCATGCCAATATCGTAAAGTTAAAAGAGGTTATCAGG
GAAAACGACCATCTTTACTTTATCTTCGAGTACATGAAGGAAAACCTTTACCAGCTCATTAAAGAAAGAA
ATAAGTTGTTTCCAGAGTCTGCTATAAGGAATATAATGTACCAGATATTGCAAGGACTGGCATTCATTCA
CAAACACGGTTTCTTCCACCGGGACTTAAAACCCGAGAACCTCCTCTGCATGGGACCAGAACTTGTGAAA
ATCGCCGACTTTGGATTGGCTCGAGAAATCCGATCAAGACCTCCGTACACAGACTATGTGTCTACTAGAT
GGTACAGGGCTCCAGAGGTACTGCTGAGATCCACCAACTACAGCTCCCCCATTGACATCTGGGCGGTAGG
CTGCATCATGGCGGAGGTGTACACGCTCCGGCCCCTTTTCCCTGGGGCCAGTGAAATTGACACAATTTTC
AAAATTTGCCAAGTGTTGGGAACACCAAAGAAGACTGACTGGCCTGAAGGCTACCAGCTGTCAAGTGCTA
TGAATTTCCTCTGGCCCCAGTGCATACCCAATAACTTAAAGACTCTAATCCCAAATGCTAGCAGCGAAGC
CATTCAGCTCCTGAGAGACTTGCTTCAGTGGGATCCCAAGAAACGACCAACCGCTAGTCAGGCTCTTCGA
TATCCTTACTTCCAGATCGGACACCCACTGGGCATCATCAGCAAGGACTCAGGAAAACCACAGAGAGAGG
TCCAGGACAAGACAGGCCCTCCTCCTTACATCAAGCCAGCCCCTCCTGCCCAGGCCCCGGCCAAGGCATA
TACGCTGATTTCTTCACGACCAAGCCAAGCCAGTCAGCCCCCTCAGCATTCTGTGCACCCCTACAAAGGC
GATGTCTCTAGGACTGAGCAGCTGAGCCATGTTCAGGAGGGCAAGCCAAGCCCTCCATTCTTCCCATCCC
TCCACAATAAGAATCTTCAGCCAAAAATCCTAGCCAGCCTGGAACAGAAAAATGGTGAAATCAAGCCAAA
GAGCAGGAGAAGATGGGGTCTCATCTCCAGGTCGACAAAGGGTTCTGACGACTGGGCCGACTTGGATGAC
TTAGACTTCAGTCCCTCTCTCACCAGGATAGATGTAAAAAACAAGAAGAGACAGAGTGATGACACCCTCT
GCAGGTTTGAAAGTGTTCTGGACCTGAAGCCATCTGAGTCAGTGGGTACAGGAACCACTGTCTCCACGCA
GGCTTCCTCGCAGAGGAGAGACACGCCGACCCTGCAGTCCTCAGCAAAGCAGCACTACTTGAAGCACTCT
CGCTACTTGCCTGGAATAAATATAAGAAATGGCGTGCTCCCAAATCCAGGCAAGGACTTTCTTCCATCAA
ATTCATGGTCCAGTTCCGGCTTGTCTGGAAAATCTTCAGGAACAGTATCAGTAGTGAGCAAAATAACTTC
AGTTGGCTCAGGCTCTGCGAGCTCTAGTGGACTGACTGGAAGCTACATTCCTTCCTTTCTGAAAAAGGAA
ATCGGTTCTGTCATGCAGAGGGTTCAGCTGGCGCCCCTCGCAGCCCCTCCCCCCGGCTACTCTTCCCTCA
AGGCCGTGAGACCTCACCCGGGGAGGCCTTTCTTTCACACCCAGCCCAGGAGCACGCCCGGCTTGATCCC
CCGACCTCCAGCTGCTCAGCCTGTGCACGGCAGGATAGACTGGTCTTCCAAGTACCCATCCCGGCGGTGA

Translation (629 aa):
MNRYTTIKQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEECMNLREVKSLKKLNHANIVKLKEVIR
ENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVK
IADFGLAREIRSRPPYTDYVSTRWYRAPEVLLRSTNYSSPIDIWAVGCIMAEVYTLRPLFPGASEIDTIF
KICQVLGTPKKTDWPEGYQLSSAMNFLWPQCIPNNLKTLIPNASSEAIQLLRDLLQWDPKKRPTASQALR
YPYFQIGHPLGIISKDSGKPQREVQDKTGPPPYIKPAPPAQAPAKAYTLISSRPSQASQPPQHSVHPYKG
DVSRTEQLSHVQEGKPSPPFFPSLHNKNLQPKILASLEQKNGEIKPKSRRRWGLISRSTKGSDDWADLDD
LDFSPSLTRIDVKNKKRQSDDTLCRFESVLDLKPSESVGTGTTVSTQASSQRRDTPTLQSSAKQHYLKHS
RYLPGINIRNGVLPNPGKDFLPSNSWSSSGLSGKSSGTVSVVSKITSVGSGSASSSGLTGSYIPSFLKKE
IGSVMQRVQLAPLAAPPPGYSSLKAVRPHPGRPFFHTQPRSTPGLIPRPPAAQPVHGRIDWSSKYPSRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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