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Report for CCDS57216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57216.1 Public Mus musculus 3 Rarres1 23 108 98 CCDS HistoryNCBI Gene:109222Re-query CCDS DB by CCDS ID:57216.1Re-query CCDS DB by GeneID:109222See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054825.4 ENSMUSP00000056728.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054825.4Link to Ensembl Protein Viewer:ENSMUSP00000056728.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054825Re-query CCDS DB by Protein ID:ENSMUSP00000056728
Original member Current member NCBI NM_001164763.1 NP_001158235.1 Accepted alive Link to Nucleotide Sequence:NM_001164763.1Link to Protein Sequence:NP_001158235.1Re-query CCDS DB by Nucleotide ID:NM_001164763Re-query CCDS DB by Protein ID:NP_001158235Link to BLAST:NP_001158235.1

Chromosomal Locations for CCDS 57216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 67479337 67479486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67479566 67479628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67485139 67485275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67490924 67491104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67495746 67495811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67515161 67515415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCAGCCCCGTCAACCCCCGATGCCAGCGCTGTTGCTGAGCCTCTGGCTGCTGCCGAGCCTCGCACTGG
CCGCTGCTGTCACTGAGCCCGCGGACCTGGAATACACCGAAGTCCCCCGGCAGCCCGCGGCCGTGGGGCT
GCCACGCGGGATCCTGCAGCTGGCGGCGCGCGCTGCGCTGCACTTCTTCAACTTCCGCGCGGGCTCGCCC
AGCGCGCTACGGGTGCTGGCCACCGTGCAGGAGGGCCGCGCGTGGGTCAACCCTCAAGAAGGCTGCGAAG
TGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAATGTTCTGC
GAGGGTGTTTTTCAAGAATGAAAAACCCAGACCGGCCGTTAATGTAACGTGCGCACGGCTCTTTGATAAA
GTGAAGAGACAAGAGAAGGATTATCGGCTTTACAAGCAGATGAAGCAATTGAAGACTCCTCTGCACAGCA
TCAGCATACCTGACAGTCATGGACACATTGATAATTCACTGAGACCCCTGTGGGACTTGGCCTTCCTCGG
CAGCTCATACGTGATGTGGGAGAAGACAACCCAGGTCCTGCACTATTACTTGGTCCAGCTCAGCAGTGTG
GAGCGGCTGAAAACGGATGATGACAGCATCGACTTTGACTTCACTGTTCTGCTTCATGAATTCTCCACAC
AGGAAATCATTCCCTGCCGTATTCACTTGGTCTGGTACCCAGGTAAACCCCTTAAAGTCAATTACCACTG
TCAAGAGCAGCAGAGCCCAGAAGAAGCCTCTGGAACTATGGAAGCATCAGCTATGGCACCGCCAGAGTTC
GGTAATTTCTAA

Translation (283 aa):
MQPRQPPMPALLLSLWLLPSLALAAAVTEPADLEYTEVPRQPAAVGLPRGILQLAARAALHFFNFRAGSP
SALRVLATVQEGRAWVNPQEGCEVDLVFSTEQYNPEQEGERLGKCSARVFFKNEKPRPAVNVTCARLFDK
VKRQEKDYRLYKQMKQLKTPLHSISIPDSHGHIDNSLRPLWDLAFLGSSYVMWEKTTQVLHYYLVQLSSV
ERLKTDDDSIDFDFTVLLHEFSTQEIIPCRIHLVWYPGKPLKVNYHCQEQQSPEEASGTMEASAMAPPEF
GNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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