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Report for CCDS16789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16789.1 Public Mus musculus 2 Lamp5 23 108 98 CCDS HistoryNCBI Gene:76161Re-query CCDS DB by CCDS ID:16789.1Re-query CCDS DB by GeneID:76161See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057503.6 ENSMUSP00000061180.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057503.6Link to Ensembl Protein Viewer:ENSMUSP00000061180.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057503Re-query CCDS DB by Protein ID:ENSMUSP00000061180
Original member Current member NCBI NM_001356548.1 NP_001343477.1 Accepted alive Link to Nucleotide Sequence:NM_001356548.1Link to Protein Sequence:NP_001343477.1Re-query CCDS DB by Nucleotide ID:NM_001356548Re-query CCDS DB by Protein ID:NP_001343477Link to BLAST:NP_001343477.1
Original member Current member NCBI NM_029530.3 NP_083806.2 Accepted alive Link to Nucleotide Sequence:NM_029530.3Link to Protein Sequence:NP_083806.2Re-query CCDS DB by Nucleotide ID:NM_029530Re-query CCDS DB by Protein ID:NP_083806Link to BLAST:NP_083806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343477.1 280 Q9D387 280 100% 0 0
NP_083806.2 280 Q9D387 280 100% 0 0

Chromosomal Locations for CCDS 16789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 136058313 136058376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136058946 136059118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136059495 136059626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136059750 136059855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136060838 136061026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136069013 136069191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGATCTCCGAGTAAGAACCCTTCTTGGTGGAGACAGACTTCGGATTCTCCTAATGTTCTTCCATGTAA
TGGTCCAAACCGTGGCAGAACAAGAAGTGGAAAATCTTTCGGGCCTTTCCACGAACCCCGAGAAAGACAT
ATTTGTGGTGCGGGAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTAT
GATGTGTGGGCCAGCAATTATGTGGATCTGATCACAGAACAGGCTGAGATCTCCTTGACCCGGGGAGCTG
AGGTGAAGGGCCACTGTGGCCACAACGAGTCGGAGCTGGAGGTGTTCTGGGTAGATCACGCCTACACACT
CAGAATGCTCTTTGTAAAGGAAAGTCACAACACTTCCAAAGGACCAGAGGCGACTTGGAATCTGAACAAG
GTGCATTTTGTCTATGATTCCTCGGAGAAGACTCACTTTAAAGCCCCTGTGAAGGTTAATAAGTACATCG
CCAGCTCTCATCACCTCTCTGCCTTGGTCACCCCAGCTGGGATGTCCTATGAGTGTCAGGCTCAGCAGAC
CATTTCTCTGGCCTCCAGTGACCCTCAGAAGACTGTCACCATGATCCTGTCCGCAGTGCACATCCAGCCC
TTTGATATCATCTCTGACTTTGTCTTCAGTGAAGAACATAAATGTCCAGTGGATGAGCAAGAGCAGTTGG
AAGAGACCCTGCCCCTGATCCTGGGCCTCATCTTGGGCCTTGTCATTGTCATAACACTTGTGATCTACCA
CATCCACCATAAAATGACTGCCAATCAAGTGCAGATCCCCAGGGACCGTTCCCAGTACAAGCACATGGGC
TAG

Translation (280 aa):
MDLRVRTLLGGDRLRILLMFFHVMVQTVAEQEVENLSGLSTNPEKDIFVVRENGTTCLMAEFAAKFIVPY
DVWASNYVDLITEQAEISLTRGAEVKGHCGHNESELEVFWVDHAYTLRMLFVKESHNTSKGPEATWNLNK
VHFVYDSSEKTHFKAPVKVNKYIASSHHLSALVTPAGMSYECQAQQTISLASSDPQKTVTMILSAVHIQP
FDIISDFVFSEEHKCPVDEQEQLEETLPLILGLILGLVIVITLVIYHIHHKMTANQVQIPRDRSQYKHMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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