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Report for CCDS21367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21367.1 Public Mus musculus 7 Slco3a1 23 108 98 CCDS HistoryNCBI Gene:108116Re-query CCDS DB by CCDS ID:21367.1Re-query CCDS DB by GeneID:108116See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026897.13 ENSMUSP00000026897.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026897.13Link to Ensembl Protein Viewer:ENSMUSP00000026897.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026897Re-query CCDS DB by Protein ID:ENSMUSP00000026897
Original member Current member NCBI NM_023908.2 NP_076397.2 Accepted alive Link to Nucleotide Sequence:NM_023908.2Link to Protein Sequence:NP_076397.2Re-query CCDS DB by Nucleotide ID:NM_023908Re-query CCDS DB by Protein ID:NP_076397Link to BLAST:NP_076397.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076397.2 710 Q8R3L5-1 710 100% 0 0

Chromosomal Locations for CCDS 21367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 74284290 74284669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74297221 74297285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74303122 74303297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74318459 74318597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74320485 74320683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74327860 74328024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74346648 74346911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74359821 74359919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74504177 74504642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74554411 74554590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCAGGGAAAGAAGCCGGGCGGCTCGTCGGGCGGCGGCCGGAGCGGCGAGCTGCAGGGGGACGAGGCGC
AGAGGAACAAGAAGAAGAAAAAGAAGGTGTCCTGCTTCTCCAACATCAAGATCTTCCTGGTGTCTGAGTG
CGCCTTGATGCTGGCGCAGGGTACGGTGGGCGCCTACCTGGTGAGCGTGTTGACCACCCTGGAACGCAGG
TTCAACCTCCAGAGCGCCGATGTGGGTGTGATCGCCAGCAGCTTTGAGATCGGCAACCTGGCGCTGATTC
TCTTCGTAAGTTACTTCGGAGCACGTGGGCACCGACCGCGCCTCATCGGCTGTGGTGGAATTGTCATGGC
ACTGGGCGCCCTGCTTTCGGCACTGCCTGAGTTCCTCACCCACCAGTACAAGTACGAGGCTGGCGAGATC
CGATGGGGAGCAGAAGGCCGCGATGTCTGTGCCACCAATGGGTCCAGCAGTGATGAGGGGCCCGACCCGG
ACCTAATCTGCCGTAACCGGACAGCCACGAACATGATGTACTTGCTGCTTATTGGGGCTCAGGTGCTCCT
GGGCATCGGTGCTACCCCCGTGCAGCCCCTGGGGGTCTCCTATATTGACGACCACGTGCGGAGAAAGGAC
TCCTCGCTCTACATAGGAATCCTGTTCACGATGTTGGTATTTGGACCAGCCTGTGGATTTATTCTGGGCT
CTTTCTGTACCAAGATCTATGTGGATGCGGTCTTCATTGACACAAGTAACCTGGACATCACTCCAGATGA
CCCGCGTTGGATCGGAGCCTGGTGGGGCGGCTTTCTGCTCTGCGGTGCCTTGCTCTTCTTCTCGTCCCTC
CTGATGTTTGGGTTCCCACAATCCCTGCCCCCACACTCAGACCCCGGCATGGAGAGTGAGCAGGCCATGC
TCCCAGAAAGAGAATATGAGAGGCCCAAGCCCAGCAATGGGGTCCTGAGACACCCTCTGGAGCCAGACAG
CAGTGCCTCCTGTTTCCAGCAACTGAGAGTGATCCCCAAGGTCACCAAGCACCTGCTCTCAAACCCTGTG
TTCACCTGCATCGTCCTGGCTGCTTGCATGGAGATTGCTGTGGTGGCTGGCTTCGCTGCCTTCCTCGGCA
AGTACCTGGAACAGCAGTTTAACCTCACCACTTCCTCTGCCAACCAGCTGCTCGGGATGACGGCGATCCC
CTGTGCCTGCCTGGGCATCTTTCTGGGTGGCCTTTTGGTGAAGAAGCTGAGCCTGTCTGCCCTGGGGGCC
ATTCGAATGGCCATGCTGGTCAACCTGGTGTCCACAGCCTGCTACGTCTCCTTCCTCTTCCTGGGCTGTG
ACACAGGCCCTGTGGCTGGGGTCACTGTTCGCTACGGAAACAACTCAGCACGTGGCTCGGCCCTTGACCC
TTACTCTCCGTGCAACAACAACTGTGAATGCCAGACGGACTCCTTCACGCCAGTGTGCGGGGCCGATGGC
ATCACCTACCTGTCAGCCTGCTTCGCCGGATGCAACAGCACGAACCTCACAGGCTGTGCGTGCCTCACCA
CTGTCCCCCCTGAGAATGCCAGCGTGGTTCCAGGAAAATGTCCCAGTCCTGGGTGCCAAGAGGCCTTCCT
CACCTTCCTCTGTGTGATGTGTGTGTGCAGCTTGATCGGGGCCATGGCCCAAACCCCTTCTGTCATCATC
CTCATCAGGACAGTCAGCCCTGAACTCAAGTCTTATGCGCTGGGAGTTCTTTTTCTGCTCCTTCGTTTGT
TGGGTTTCATCCCCCCACCTCTCATCTTCGGGGCCGGCATTGACTCCACCTGTCTGTTCTGGAGCACCTT
CTGCGGGGAACAAGGCGCCTGTGTCCTCTACGACAATGTGGTCTACAGATACCTGTACGTCAGCATCGCC
ATTGCGCTCAAGTCCTTTGCCTTCATCCTCTACACCACCACGTGGCAGTGCCTGCGGAAAAACTATAAAC
GCTACATCAAAAACCACGAGGGCGGGCTGAGCACCAGTGAGTTCTTTGCCTCTACTCTGACCCTAGACAA
TCTGGGGAGGGACCCTGTGCCCGCACACCAGACACATAGGACAAAATTTATCTATAACCTGGAAGACCAT
GAGTGGTGTGAAAACATGGAATCTGTTTTATAG

Translation (710 aa):
MQGKKPGGSSGGGRSGELQGDEAQRNKKKKKKVSCFSNIKIFLVSECALMLAQGTVGAYLVSVLTTLERR
FNLQSADVGVIASSFEIGNLALILFVSYFGARGHRPRLIGCGGIVMALGALLSALPEFLTHQYKYEAGEI
RWGAEGRDVCATNGSSSDEGPDPDLICRNRTATNMMYLLLIGAQVLLGIGATPVQPLGVSYIDDHVRRKD
SSLYIGILFTMLVFGPACGFILGSFCTKIYVDAVFIDTSNLDITPDDPRWIGAWWGGFLLCGALLFFSSL
LMFGFPQSLPPHSDPGMESEQAMLPEREYERPKPSNGVLRHPLEPDSSASCFQQLRVIPKVTKHLLSNPV
FTCIVLAACMEIAVVAGFAAFLGKYLEQQFNLTTSSANQLLGMTAIPCACLGIFLGGLLVKKLSLSALGA
IRMAMLVNLVSTACYVSFLFLGCDTGPVAGVTVRYGNNSARGSALDPYSPCNNNCECQTDSFTPVCGADG
ITYLSACFAGCNSTNLTGCACLTTVPPENASVVPGKCPSPGCQEAFLTFLCVMCVCSLIGAMAQTPSVII
LIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGAGIDSTCLFWSTFCGEQGACVLYDNVVYRYLYVSIA
IALKSFAFILYTTTWQCLRKNYKRYIKNHEGGLSTSEFFASTLTLDNLGRDPVPAHQTHRTKFIYNLEDH
EWCENMESVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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